{ "type": "genome", "identifier": "GCF_030160255.1", "organism": "Gluconobacter sphaericus NBRC 12467", "title": "Gluconobacter sphaericus NBRC 12467", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institution of Microbiology, Chinese Academy of Science(WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030160255.1", "bioproject": "PRJNA224116", "biosample": "SAMD00238651", "wgs_master": "BSNZ00000000.1", "refseq_category": "na", "taxid": "1307951", "species_taxid": "574987", "organism_name": "Gluconobacter sphaericus NBRC 12467", "infraspecific_name": "strain=NBRC 12467", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/15", "asm_name": "ASM3016025v1", "asm_submitter": "Institution of Microbiology, Chinese Academy of Science(WDCM)", "gbrs_paired_asm": "GCA_030160255.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/160/255/GCF_030160255.1_ASM3016025v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3536135", "genome_size_ungapped": "3536135", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "63", "contig_count": "63", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030160255.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "3409", "protein_coding_gene_count": "3206", "non_coding_gene_count": "65", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-15", "dateModified": "2023-02-15", "datePublished": "2023-02-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Gluconobacter sphaericus NBRC 12467" ], "sample_taxid": [ "1307951" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.003 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 20.83, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3536135", "Number of Sequences": "63", "Longest Sequences (bp)": "706711", "N50 (bp)": "310969", "Gap Ratio (%)": "0.000085", "GCcontent (%)": "58.3", "Number of CDSs": "3342", "Average Protein Length": "312.3", "Coding Ratio (%)": "88.5", "Number of rRNAs": "4", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gluconobacter sphaericus", "strain": "strain=LMG1414", "accession": "GCA_015244605.1", "taxid": 574987, "species_taxid": 574987, 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95, "status": "below_threshold" }, { "organism_name": "Gluconobacter aidae", "strain": "strain=AC10", "accession": "GCA_009547075.1", "taxid": 2662454, "species_taxid": 2662454, "relation_to_type": "type", "validated": true, "ani": 89.5281, "matched_fragments": 765, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter vitians", "strain": "strain=LMG 31484", "accession": "GCA_015244565.1", "taxid": 2728102, "species_taxid": 2728102, "relation_to_type": "type", "validated": true, "ani": 87.2993, "matched_fragments": 718, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter albidus", "strain": "strain=NBRC 3250", "accession": "GCA_002723915.1", "taxid": 318683, "species_taxid": 318683, "relation_to_type": "type", "validated": true, "ani": 86.5869, "matched_fragments": 723, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter kondonii", "strain": "strain=NBRC 3266", "accession": "GCA_002723995.1", "taxid": 941463, "species_taxid": 941463, "relation_to_type": "type", "validated": true, "ani": 86.2941, "matched_fragments": 722, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gluconobacter cadivus", "strain": "strain=LMG 1744", "accession": "GCA_015244745.1", "taxid": 2728101, "species_taxid": 2728101, "relation_to_type": "type", "validated": true, "ani": 86.1879, "matched_fragments": 739, "total_fragments": 1149, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 20.83, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_006539125.1", "gtdb_species": "s__Gluconobacter sphaericus", "ani": 99.9394, "matched_fragments": 960, "total_fragments": 1149, "gtdb_taxonomy": 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