{
    "type": "genome",
    "identifier": "GCF_030160375.1",
    "organism": "Mixta theicola",
    "title": "Mixta theicola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institution of Microbiology, Chinese Academy of Science(WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_030160375.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00238696",
        "wgs_master": "BSOF00000000.1",
        "refseq_category": "na",
        "taxid": "1458355",
        "species_taxid": "1458355",
        "organism_name": "Mixta theicola",
        "infraspecific_name": "strain=NBRC 110557",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/02/15",
        "asm_name": "ASM3016037v1",
        "asm_submitter": "Institution of Microbiology, Chinese Academy of Science(WDCM)",
        "gbrs_paired_asm": "GCA_030160375.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/160/375/GCF_030160375.1_ASM3016037v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4281454",
        "genome_size_ungapped": "4279454",
        "gc_percent": "54.000000",
        "replicon_count": "0",
        "scaffold_count": "36",
        "contig_count": "36",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_030160375.1-RS_2024_12_23",
        "annotation_date": "2024-12-23",
        "total_gene_count": "4102",
        "protein_coding_gene_count": "3883",
        "non_coding_gene_count": "89",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-02-15",
    "dateModified": "2023-02-15",
    "datePublished": "2023-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mixta theicola"
        ],
        "sample_taxid": [
            "1458355"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.205 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4281454",
        "Number of Sequences": "36",
        "Longest Sequences (bp)": "861218",
        "N50 (bp)": "585184",
        "Gap Ratio (%)": "0.046713",
        "GCcontent (%)": "54.0",
        "Number of CDSs": "3929",
        "Average Protein Length": "311.8",
        "Coding Ratio (%)": "85.8",
        "Number of rRNAs": "2",
        "Number of tRNAs": "71",
        "Number of CRISPRs": "2"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Mixta calida",
                "strain": "strain=DSM 22759",
                "accession": "GCA_002953215.1",
                "taxid": 665913,
                "species_taxid": 665913,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9419,
                "matched_fragments": 1063,
                "total_fragments": 1413,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mixta calida",
                "strain": "strain=LMG 25383",
                "accession": "GCA_002095355.1",
                "taxid": 665913,
                "species_taxid": 665913,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.9308,
                "matched_fragments": 979,
                "total_fragments": 1413,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mixta gaviniae",
                "strain": "strain=DSM 22758",
                "accession": "GCA_002953195.1",
                "taxid": 665914,
                "species_taxid": 665914,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.8553,
                "matched_fragments": 1058,
                "total_fragments": 1413,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mixta tenebrionis",
                "strain": "strain=BIT-26",
                "accession": "GCA_006517625.1",
                "taxid": 2562439,
                "species_taxid": 2562439,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.1906,
                "matched_fragments": 1009,
                "total_fragments": 1413,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pantoea septica",
                "strain": "strain=LMG 5345",
                "accession": "GCA_002095575.1",
                "taxid": 472695,
                "species_taxid": 472695,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1993,
                "matched_fragments": 740,
                "total_fragments": 1413,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erwinia iniecta",
                "strain": "strain=B120",
                "accession": "GCA_001267535.1",
                "taxid": 1560201,
                "species_taxid": 1560201,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1448,
                "matched_fragments": 698,
                "total_fragments": 1413,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erwinia phyllosphaerae",
                "strain": "strain=CMYE1",
                "accession": "GCA_019132875.1",
                "taxid": 2853256,
                "species_taxid": 2853256,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7406,
                "matched_fragments": 679,
                "total_fragments": 1413,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erwinia aphidicola",
                "strain": "strain=X001",
                "accession": "GCA_024169515.1",
                "taxid": 68334,
                "species_taxid": 68334,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.7029,
                "matched_fragments": 682,
                "total_fragments": 1413,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Erwinia aphidicola",
                "strain": "strain=JCM 21238",
                "accession": "GCA_014773485.1",
                "taxid": 68334,
                "species_taxid": 68334,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.6994,
                "matched_fragments": 673,
                "total_fragments": 1413,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Siccibacter turicensis",
                "strain": "strain=LMG 23730",
                "accession": "GCA_000463155.2",
                "taxid": 357233,
                "species_taxid": 357233,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.9158,
                "matched_fragments": 502,
                "total_fragments": 1413,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cronobacter sakazakii",
                "strain": "strain=ATCC 29544",
                "accession": "GCA_001971035.1",
                "taxid": 28141,
                "species_taxid": 28141,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.858,
                "matched_fragments": 521,
                "total_fragments": 1413,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter wuhouensis",
                "strain": "strain=WCHEW120002",
                "accession": "GCA_004331265.1",
                "taxid": 2529381,
                "species_taxid": 2529381,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.73,
                "matched_fragments": 474,
                "total_fragments": 1413,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterobacter roggenkampii",
                "strain": "strain=DSM 16690",
                "accession": "GCA_024390995.1",
                "taxid": 1812935,
                "species_taxid": 1812935,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6561,
                "matched_fragments": 473,
                "total_fragments": 1413,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Providencia thailandensis",
                "strain": "strain=KCTC 23281",
                "accession": "GCA_014652175.1",
                "taxid": 990144,
                "species_taxid": 990144,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8782,
                "matched_fragments": 79,
                "total_fragments": 1413,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002895925.1",
                "gtdb_species": "s__Mixta theicola",
                "ani": 99.9843,
                "matched_fragments": 1395,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Mixta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002101395.1",
                "gtdb_species": "s__Mixta alhagi",
                "ani": 89.5204,
                "matched_fragments": 1114,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Mixta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002953215.1",
                "gtdb_species": "s__Mixta calida",
                "ani": 84.9267,
                "matched_fragments": 1065,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Mixta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.65",
                "min_intra_species_ani": "99.42",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 22,
                "status": "-"
            },
            {
                "accession": "GCF_002953195.1",
                "gtdb_species": "s__Mixta gaviniae",
                "ani": 84.8261,
                "matched_fragments": 1061,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Mixta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.91",
                "min_intra_species_ani": "99.91",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_006517625.1",
                "gtdb_species": "s__Mixta tenebrionis",
                "ani": 84.1892,
                "matched_fragments": 1009,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Mixta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.45",
                "min_intra_species_ani": "99.45",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_009914055.1",
                "gtdb_species": "s__Mixta intestinalis",
                "ani": 83.6296,
                "matched_fragments": 990,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Mixta",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002920175.1",
                "gtdb_species": "s__Pantoea sp002920175",
                "ani": 80.7763,
                "matched_fragments": 767,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pantoea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.09",
                "min_intra_species_ani": "99.09",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002095465.1",
                "gtdb_species": "s__Pantoea rodasii",
                "ani": 79.5932,
                "matched_fragments": 604,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pantoea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.97",
                "min_intra_species_ani": "99.97",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_018842675.1",
                "gtdb_species": "s__Pantoea sp018842675",
                "ani": 79.4484,
                "matched_fragments": 584,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pantoea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002858715.1",
                "gtdb_species": "s__Chimaeribacter coloradensis",
                "ani": 79.002,
                "matched_fragments": 525,
                "total_fragments": 1413,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Chimaeribacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.66",
                "min_intra_species_ani": "98.66",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Mixta",
        "theicola"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}