{ "type": "genome", "identifier": "GCF_030160455.1", "organism": "Limnobacter litoralis", "title": "Limnobacter litoralis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institution of Microbiology, Chinese Academy of Science(WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030160455.1", "bioproject": "PRJNA224116", "biosample": "SAMD00238700", "wgs_master": "BSOJ00000000.1", "refseq_category": "reference genome", "taxid": "481366", "species_taxid": "481366", "organism_name": "Limnobacter litoralis", "infraspecific_name": "strain=NBRC 105857", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/15", "asm_name": "ASM3016045v1", "asm_submitter": "Institution of Microbiology, Chinese Academy of Science(WDCM)", "gbrs_paired_asm": "GCA_030160455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/160/455/GCF_030160455.1_ASM3016045v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3012031", "genome_size_ungapped": "3012031", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "47", "contig_count": "47", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030160455.1-RS_2024_06_02", "annotation_date": "2024-06-02", "total_gene_count": "2925", "protein_coding_gene_count": "2856", "non_coding_gene_count": "43", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-15", "dateModified": "2023-02-15", "datePublished": "2023-02-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Limnobacter litoralis" ], "sample_taxid": [ "481366" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.853 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3012031", "Number of Sequences": "47", "Longest Sequences (bp)": "487998", "N50 (bp)": "212630", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.4", "Number of CDSs": "2849", "Average Protein Length": "324.9", "Coding Ratio (%)": "92.2", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limnobacter humi", "strain": "strain=NBRC 111650", "accession": "GCA_024518835.1", "taxid": 1778671, "species_taxid": 1778671, 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"matched_fragments": 57, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum camelliae", "strain": "strain=WT00C", "accession": "GCA_001929405.1", "taxid": 1892903, "species_taxid": 1892903, "relation_to_type": "type", "validated": true, "ani": 76.1175, "matched_fragments": 67, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Duganella dendranthematis", "strain": "strain=AF9R3", "accession": "GCA_012849375.1", "taxid": 2728021, "species_taxid": 2728021, "relation_to_type": "type", "validated": true, "ani": 76.0638, "matched_fragments": 62, "total_fragments": 981, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pigmentiphaga kullae", "strain": "strain=K24", "accession": "GCA_004216695.1", "taxid": 151784, "species_taxid": 151784, "relation_to_type": "type", "validated": true, "ani": 75.9557, "matched_fragments": 54, "total_fragments": 981, "ani_threshold": 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