{
    "type": "genome",
    "identifier": "GCF_030160495.1",
    "organism": "Shewanella decolorationis",
    "title": "Shewanella decolorationis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Institution of Microbiology, Chinese Academy of Science(WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_030160495.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00238702",
        "wgs_master": "BSOL00000000.1",
        "refseq_category": "na",
        "taxid": "256839",
        "species_taxid": "256839",
        "organism_name": "Shewanella decolorationis",
        "infraspecific_name": "strain=NBRC 103170",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/02/15",
        "asm_name": "ASM3016049v1",
        "asm_submitter": "Institution of Microbiology, Chinese Academy of Science(WDCM)",
        "gbrs_paired_asm": "GCA_030160495.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/160/495/GCF_030160495.1_ASM3016049v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4838671",
        "genome_size_ungapped": "4838364",
        "gc_percent": "47.000000",
        "replicon_count": "0",
        "scaffold_count": "41",
        "contig_count": "41",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_030160495.1-RS_2024_06_02",
        "annotation_date": "2024-06-02",
        "total_gene_count": "4280",
        "protein_coding_gene_count": "4122",
        "non_coding_gene_count": "113",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-02-15",
    "dateModified": "2023-02-15",
    "datePublished": "2023-02-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Shewanella decolorationis"
        ],
        "sample_taxid": [
            "256839"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not applicable"
        ],
        "sample_host_location_id": [],
        "data_size": "1.383 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4838671",
        "Number of Sequences": "41",
        "Longest Sequences (bp)": "1066536",
        "N50 (bp)": "285282",
        "Gap Ratio (%)": "0.006489",
        "GCcontent (%)": "47.1",
        "Number of CDSs": "4159",
        "Average Protein Length": "333.2",
        "Coding Ratio (%)": "85.9",
        "Number of rRNAs": "7",
        "Number of tRNAs": "93",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Shewanella decolorationis",
                "strain": "strain=S12",
                "accession": "GCA_000485795.1",
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                "species_taxid": 256839,
                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Shewanella seohaensis",
                "strain": "strain=CCUG 60900",
                "accession": "GCA_023283775.1",
                "taxid": 755175,
                "species_taxid": 755175,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.4805,
                "matched_fragments": 1352,
                "total_fragments": 1597,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella seohaensis",
                "strain": "strain=KCTC 23556",
                "accession": "GCA_025449215.1",
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                "species_taxid": 755175,
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                "ani": 92.2135,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella xiamenensis",
                "strain": "strain=JCM 16212",
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                "taxid": 332186,
                "species_taxid": 332186,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.854,
                "matched_fragments": 1310,
                "total_fragments": 1597,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella oneidensis",
                "strain": "strain=MR-1",
                "accession": "GCA_000146165.2",
                "taxid": 70863,
                "species_taxid": 70863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.6701,
                "matched_fragments": 1273,
                "total_fragments": 1597,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella oneidensis",
                "strain": "strain=MR-1",
                "accession": "GCA_013267215.1",
                "taxid": 70863,
                "species_taxid": 70863,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.5761,
                "matched_fragments": 1283,
                "total_fragments": 1597,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella profunda",
                "strain": "strain=DSM 15900",
                "accession": "GCA_023283765.1",
                "taxid": 254793,
                "species_taxid": 254793,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4676,
                "matched_fragments": 885,
                "total_fragments": 1597,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella oncorhynchi",
                "strain": "strain=S-1",
                "accession": "GCA_012584455.1",
                "taxid": 2726434,
                "species_taxid": 2726434,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4058,
                "matched_fragments": 990,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shewanella glacialipiscicola",
                "strain": "strain=LMG 23744",
                "accession": "GCA_023283485.1",
                "taxid": 614069,
                "species_taxid": 614069,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4129,
                "matched_fragments": 764,
                "total_fragments": 1597,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000485795.1",
                "gtdb_species": "s__Shewanella decolorationis",
                "ani": 99.9777,
                "matched_fragments": 1572,
                "total_fragments": 1597,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.60",
                "min_intra_species_ani": "97.51",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000203935.1",
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                "matched_fragments": 1396,
                "total_fragments": 1597,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.76",
                "min_intra_species_ani": "95.76",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002216875.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.51",
                "min_intra_species_ani": "96.32",
                "mean_intra_species_af": "0.89",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000014665.1",
                "gtdb_species": "s__Shewanella sp000014665",
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                "matched_fragments": 1334,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.13",
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                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella",
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                "mean_intra_species_ani": "97.56",
                "min_intra_species_ani": "97.34",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 25,
                "status": "-"
            },
            {
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                "mean_intra_species_ani": "99.99",
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                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.227,
        "cell_length": 0.265,
        "doubling_h": 0.077,
        "growth_tmp": 25.0,
        "optimum_tmp": 31.75,
        "optimum_ph": 7.0,
        "genome_size": 4844499.5,
        "gc_content": 47.1,
        "coding_genes": 4161.776,
        "rRNA16S_genes": 9.437,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 0.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Shewanella",
        "decolorationis"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}