{ "type": "genome", "identifier": "GCF_030160555.1", "organism": "Sphingomonas astaxanthinifaciens DSM 22298", "title": "Sphingomonas astaxanthinifaciens DSM 22298", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institution of Microbiology, Chinese Academy of Science(WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030160555.1", "bioproject": "PRJNA224116", "biosample": "SAMD00238706", "wgs_master": "BSOO00000000.1", "refseq_category": "na", "taxid": "1123267", "species_taxid": "407019", "organism_name": "Sphingomonas astaxanthinifaciens DSM 22298", "infraspecific_name": "strain=NBRC 102146", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/15", "asm_name": "ASM3016055v1", "asm_submitter": "Institution of Microbiology, Chinese Academy of Science(WDCM)", "gbrs_paired_asm": "GCA_030160555.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/160/555/GCF_030160555.1_ASM3016055v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2546734", "genome_size_ungapped": "2546598", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "77", "contig_count": "77", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030160555.1-RS_2024_06_02", "annotation_date": "2024-06-02", "total_gene_count": "2609", "protein_coding_gene_count": "2524", "non_coding_gene_count": "52", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-15", "dateModified": "2023-02-15", "datePublished": "2023-02-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingomonas astaxanthinifaciens DSM 22298" ], "sample_taxid": [ "1123267" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.695 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2546734", "Number of Sequences": "77", "Longest Sequences (bp)": "206154", "N50 (bp)": "75751", "Gap Ratio (%)": "0.005340", "GCcontent (%)": "68.2", "Number of CDSs": "2507", "Average Protein Length": "306.9", "Coding Ratio (%)": "90.6", "Number of rRNAs": "3", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sphingomonas astaxanthinifaciens", "strain": "strain=DSM 22298", "accession": "GCA_000711715.1", "taxid": 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