{ "type": "genome", "identifier": "GCF_030160715.1", "organism": "Bradyrhizobium iriomotense", "title": "Bradyrhizobium iriomotense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030160715.1", "bioproject": "PRJNA224116", "biosample": "SAMD00576799", "wgs_master": "BSOW00000000.1", "refseq_category": "reference genome", "taxid": "441950", "species_taxid": "441950", "organism_name": "Bradyrhizobium iriomotense", "infraspecific_name": "strain=NBRC 102520", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/16", "asm_name": "ASM3016071v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_030160715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/160/715/GCF_030160715.1_ASM3016071v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9789577", "genome_size_ungapped": "9789577", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "182", "contig_count": "182", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030160715.1-RS_2024_06_02", "annotation_date": "2024-06-02", "total_gene_count": "9121", "protein_coding_gene_count": "8794", "non_coding_gene_count": "62", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-16", "dateModified": "2023-02-16", "datePublished": "2023-02-16", "_annotation": { "sample_count": 1, "sample_organism": [ "Bradyrhizobium iriomotense" ], "sample_taxid": [ "441950" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.731 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9789577", "Number of Sequences": "182", "Longest Sequences (bp)": "500802", "N50 (bp)": "219482", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.8", "Number of CDSs": "9092", "Average Protein Length": "297.8", "Coding Ratio (%)": "83.0", "Number of rRNAs": "3", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bradyrhizobium niftali", "strain": "strain=CNPSo 3448", "accession": "GCA_004571025.1", "taxid": 2560055, "species_taxid": 2560055, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium japonicum", "strain": "strain=USDA 6", "accession": "GCA_000284375.1", "taxid": 375, "species_taxid": 375, "relation_to_type": "type", "validated": true, "ani": 86.0608, "matched_fragments": 1858, "total_fragments": 3189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium forestalis", "strain": "strain=INPA54B", "accession": "GCA_002795245.1", "taxid": 1419263, "species_taxid": 1419263, "relation_to_type": "type", "validated": true, "ani": 86.0418, "matched_fragments": 1705, "total_fragments": 3189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium betae", "strain": "strain=CECT 5829", "accession": "GCA_024806875.1", "taxid": 244734, "species_taxid": 244734, "relation_to_type": "type", "validated": true, "ani": 85.9982, "matched_fragments": 1622, "total_fragments": 3189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium nitroreducens", "strain": "strain=TSA1", "accession": "GCA_002776695.1", "taxid": 709803, "species_taxid": 709803, "relation_to_type": "type", "validated": true, "ani": 85.9676, "matched_fragments": 1726, "total_fragments": 3189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium shewense", "strain": "strain=ERR11", "accession": "GCA_900094605.1", "taxid": 1761772, "species_taxid": 1761772, "relation_to_type": "type", "validated": true, "ani": 85.8944, "matched_fragments": 1791, "total_fragments": 3189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium symbiodeficiens", "strain": "strain=85S1MB", "accession": "GCA_002266465.2", "taxid": 1404367, "species_taxid": 1404367, "relation_to_type": "type", "validated": true, "ani": 85.8903, "matched_fragments": 1626, "total_fragments": 3189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cosmicum", "strain": "strain=58S1", "accession": "GCA_007290395.1", "taxid": 1404864, "species_taxid": 1404864, "relation_to_type": "type", "validated": true, "ani": 85.8091, "matched_fragments": 1653, "total_fragments": 3189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium vignae", "strain": "strain=LMG 28791", "accession": "GCA_004114425.1", "taxid": 1549949, "species_taxid": 1549949, "relation_to_type": "type", "validated": true, "ani": 85.7957, "matched_fragments": 1660, "total_fragments": 3189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium diversitatis", "strain": "strain=CNPSo 4019", "accession": "GCA_016031635.1", "taxid": 2755406, "species_taxid": 2755406, "relation_to_type": "type", "validated": true, "ani": 85.7517, "matched_fragments": 1707, "total_fragments": 3189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium guangxiense", "strain": "strain=CCBAU 53363", "accession": "GCA_004114915.1", "taxid": 1325115, "species_taxid": 1325115, "relation_to_type": "type", "validated": true, "ani": 85.7428, "matched_fragments": 1722, "total_fragments": 3189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium hipponense", "strain": "strain=aSej3", "accession": "GCA_008123965.1", "taxid": 2605638, "species_taxid": 2605638, "relation_to_type": "type", "validated": true, "ani": 85.732, "matched_fragments": 1700, "total_fragments": 3189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium daqingense", "strain": "strain=CCBAU 15774", "accession": "GCA_021044685.1", "taxid": 993502, "species_taxid": 993502, "relation_to_type": "type", "validated": true, "ani": 85.6899, "matched_fragments": 1698, "total_fragments": 3189, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium daqingense", "strain": "strain=CGMCC 1.10947", "accession": "GCA_007830205.1", 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