{ "tc_result": [ { "organism_name": "Hydrogenophaga pseudoflava", "strain": "strain=NBRC 102511", "accession": "GCA_001592285.1", "taxid": 47421, "species_taxid": 47421, "relation_to_type": "type", "validated": true, "ani": 84.1072, "matched_fragments": 905, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga flava", "strain": "strain=NBRC 102514", "accession": "GCA_001571145.1", "taxid": 65657, "species_taxid": 65657, "relation_to_type": "type", "validated": true, "ani": 83.8194, "matched_fragments": 923, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga aromaticivorans", "strain": "strain=D2P1", "accession": "GCA_013387465.1", "taxid": 2610898, "species_taxid": 2610898, "relation_to_type": "type", "validated": true, "ani": 82.8963, "matched_fragments": 894, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga taeniospiralis", "strain": "strain=NBRC 102512", "accession": "GCA_001592305.1", "taxid": 65656, "species_taxid": 65656, "relation_to_type": "type", "validated": true, "ani": 82.5137, "matched_fragments": 878, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga palleronii", "strain": "strain=NBRC 102513", "accession": "GCA_001571225.1", "taxid": 65655, "species_taxid": 65655, "relation_to_type": "type", "validated": true, "ani": 82.4927, "matched_fragments": 779, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 82.4488, "matched_fragments": 788, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga borbori", "strain": "strain=LA-38", "accession": "GCA_003417535.1", "taxid": 2294117, "species_taxid": 2294117, "relation_to_type": "type", "validated": true, "ani": 82.1239, "matched_fragments": 777, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga intermedia", "strain": "strain=S1", "accession": "GCA_000723405.1", "taxid": 65786, "species_taxid": 65786, "relation_to_type": "type", "validated": true, "ani": 81.7918, "matched_fragments": 783, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga intermedia", "strain": "strain=DSM 5680", "accession": "GCA_005938115.1", "taxid": 65786, "species_taxid": 65786, "relation_to_type": "type", "validated": true, "ani": 81.7627, "matched_fragments": 771, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga intermedia", "strain": "strain=NBRC 102510", "accession": "GCA_001571205.1", "taxid": 65786, "species_taxid": 65786, "relation_to_type": "type", "validated": true, "ani": 81.7614, "matched_fragments": 766, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tepidicella baoligensis", "strain": "strain=B18-50", "accession": "GCA_013432195.1", "taxid": 2707016, "species_taxid": 2707016, "relation_to_type": "type", "validated": true, "ani": 80.2767, "matched_fragments": 485, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter humi", "strain": "strain=18x22-1", "accession": "GCA_004681975.1", "taxid": 2530451, "species_taxid": 2530451, "relation_to_type": "type", "validated": true, "ani": 80.1946, "matched_fragments": 592, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas phosphati", "strain": "strain=CGMCC 1.12294", "accession": "GCA_014637085.1", "taxid": 1211803, "species_taxid": 1211803, "relation_to_type": "type", "validated": true, "ani": 80.1904, "matched_fragments": 530, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acidovorax delafieldii", "strain": "strain=DSM 64", "accession": "GCA_007993815.1", "taxid": 47920, "species_taxid": 47920, "relation_to_type": "type", "validated": true, "ani": 79.9472, "matched_fragments": 585, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas aquatica", "strain": "strain=NBRC 14918", "accession": "GCA_000739875.1", "taxid": 225991, "species_taxid": 225991, "relation_to_type": "type", "validated": true, "ani": 79.9175, "matched_fragments": 477, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter pinisoli", "strain": "strain=MAH-25", "accession": "GCA_009758015.1", "taxid": 2682844, "species_taxid": 2682844, "relation_to_type": "type", "validated": true, "ani": 79.9171, "matched_fragments": 614, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brachymonas denitrificans", "strain": "strain=DSM 15123", "accession": "GCA_900110225.1", "taxid": 28220, "species_taxid": 28220, "relation_to_type": "type", "validated": true, "ani": 79.8178, "matched_fragments": 395, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limnohabitans radicicola", "strain": "strain=JUR4", "accession": "GCA_014837235.1", "taxid": 2771427, "species_taxid": 2771427, "relation_to_type": "type", "validated": true, "ani": 79.6292, "matched_fragments": 436, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_000964545.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 78.9768, "matched_fragments": 453, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas koreensis", "strain": "strain=KCTC 12005", "accession": "GCA_021026195.1", "taxid": 160825, "species_taxid": 160825, "relation_to_type": "type", "validated": true, "ani": 78.9507, "matched_fragments": 450, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_001418295.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 78.9262, "matched_fragments": 451, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Comamonas thiooxydans", "strain": "strain=DSM 17888", "accession": "GCA_001517325.1", "taxid": 363952, "species_taxid": 363952, "relation_to_type": "type", "validated": true, "ani": 78.9207, "matched_fragments": 451, "total_fragments": 1503, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_001592285.1", "gtdb_species": "s__Hydrogenophaga pseudoflava", "ani": 84.045, "matched_fragments": 911, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.77", "min_intra_species_ani": "97.69", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001571145.1", "gtdb_species": "s__Hydrogenophaga flava", "ani": 83.8338, "matched_fragments": 922, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016790705.1", "gtdb_species": "s__Hydrogenophaga sp016790705", "ani": 83.5331, "matched_fragments": 716, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013387465.1", "gtdb_species": "s__Hydrogenophaga aromaticivorans", "ani": 82.8578, "matched_fragments": 901, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.00", "min_intra_species_ani": "95.64", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.82", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCA_018780075.1", "gtdb_species": "s__Hydrogenophaga sp018780075", "ani": 82.7891, "matched_fragments": 841, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001770905.1", "gtdb_species": "s__Hydrogenophaga sp001770905", "ani": 82.6568, "matched_fragments": 853, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.83", "min_intra_species_ani": "99.75", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_013823655.1", "gtdb_species": "s__Hydrogenophaga sp013823655", "ani": 82.5034, "matched_fragments": 532, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011388215.1", "gtdb_species": "s__Hydrogenophaga sp011388215", "ani": 82.4541, "matched_fragments": 787, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.06", "min_intra_species_ani": "99.06", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018993155.1", "gtdb_species": "s__Hydrogenophaga sp018993155", "ani": 82.3088, "matched_fragments": 765, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018903185.1", "gtdb_species": "s__Hydrogenophaga sp018903185", "ani": 82.2833, "matched_fragments": 406, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.34", "min_intra_species_ani": "99.34", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002127215.1", "gtdb_species": "s__Hydrogenophaga sp002127215", "ani": 82.2341, "matched_fragments": 656, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003417535.1", "gtdb_species": "s__Hydrogenophaga borbori", "ani": 82.13, "matched_fragments": 776, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.89", "min_intra_species_ani": "96.31", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_006227825.1", "gtdb_species": "s__Hydrogenophaga sp006227825", "ani": 82.0675, "matched_fragments": 553, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016741995.1", "gtdb_species": "s__Hydrogenophaga sp016741995", "ani": 82.0379, "matched_fragments": 682, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011772445.1", "gtdb_species": "s__Hydrogenophaga sp011772445", "ani": 81.8509, "matched_fragments": 721, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_013823485.1", "gtdb_species": "s__Hydrogenophaga sp013823485", "ani": 81.8323, "matched_fragments": 588, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.29", "min_intra_species_ani": "98.29", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.80", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000723405.1", "gtdb_species": "s__Hydrogenophaga intermedia", "ani": 81.7986, "matched_fragments": 781, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Hydrogenophaga", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.52", "min_intra_species_ani": "98.31", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_014637085.1", "gtdb_species": "s__Comamonas phosphati", "ani": 80.2182, "matched_fragments": 527, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000739875.1", "gtdb_species": "s__Comamonas aquatica", "ani": 79.9105, "matched_fragments": 478, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.97", "min_intra_species_ani": "96.57", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_000964545.1", "gtdb_species": "s__Comamonas thiooxydans", "ani": 78.9812, "matched_fragments": 453, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.51", "min_intra_species_ani": "95.23", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 29, "status": "-" }, { "accession": "GCF_000241525.1", "gtdb_species": "s__Comamonas testosteroni", "ani": 78.9629, "matched_fragments": 459, "total_fragments": 1503, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Comamonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.74", "min_intra_species_ani": "98.70", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.94", "num_clustered_genomes": 6, "status": "-" } ] }