{ "type": "genome", "identifier": "GCF_030160935.1", "organism": "Methylobacterium gnaphalii", "title": "Methylobacterium gnaphalii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030160935.1", "bioproject": "PRJNA224116", "biosample": "SAMD00576810", "wgs_master": "BSPH00000000.1", "refseq_category": "na", "taxid": "1010610", "species_taxid": "1010610", "organism_name": "Methylobacterium gnaphalii", "infraspecific_name": "strain=NBRC 107716", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/02/15", "asm_name": "ASM3016093v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_030160935.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/160/935/GCF_030160935.1_ASM3016093v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4796095", "genome_size_ungapped": "4795085", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "149", "contig_count": "149", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030160935.1-RS_2024_06_02", "annotation_date": "2024-06-02", "total_gene_count": "4793", "protein_coding_gene_count": "4594", "non_coding_gene_count": "53", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-02-15", "dateModified": "2023-02-15", "datePublished": "2023-02-15", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium gnaphalii" ], "sample_taxid": [ "1010610" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.332 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4796095", "Number of Sequences": "149", "Longest Sequences (bp)": "232668", "N50 (bp)": "97680", "Gap Ratio (%)": "0.021059", "GCcontent (%)": "65.9", "Number of CDSs": "4660", "Average Protein Length": "282.7", "Coding Ratio (%)": "82.4", "Number of rRNAs": "3", "Number of tRNAs": "49", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacterium gnaphalii", "strain": "strain=NBRC 107716", "accession": "GCA_007992215.1", "taxid": 1010610, "species_taxid": 1010610, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium durans", "strain": "strain=17SD2-17", "accession": "GCA_003173715.1", "taxid": 2202825, "species_taxid": 2202825, "relation_to_type": "type", "validated": true, "ani": 80.5246, "matched_fragments": 805, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium radiotolerans", "strain": "strain=JCM 2831", "accession": "GCA_000019725.1", "taxid": 31998, "species_taxid": 31998, "relation_to_type": "type", "validated": true, "ani": 80.2852, "matched_fragments": 787, "total_fragments": 1526, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007992215.1", "gtdb_species": "s__Methylobacterium gnaphalii", "ani": 99.9815, "matched_fragments": 1472, "total_fragments": 1526, "gtdb_taxonomy": 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