{ "tc_result": [ { "organism_name": "Ciceribacter naphthalenivorans", "strain": "strain=NBRC 107585", "accession": "GCA_007992095.1", "taxid": 1118451, "species_taxid": 1118451, "relation_to_type": "type", "validated": true, "ani": 99.9804, "matched_fragments": 1564, "total_fragments": 1631, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Ciceribacter selenitireducens", "strain": "strain=ATCC BAA-1503", "accession": "GCA_000518785.1", "taxid": 448181, "species_taxid": 448181, "relation_to_type": "type", "validated": true, "ani": 84.4131, "matched_fragments": 1102, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium daejeonense", "strain": "strain=CCBAU10050", "accession": "GCA_011045155.1", "taxid": 240521, "species_taxid": 240521, "relation_to_type": "type", "validated": true, "ani": 80.4507, "matched_fragments": 790, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium daejeonense", "strain": "strain=L61", "accession": "GCA_014280875.1", "taxid": 240521, "species_taxid": 240521, "relation_to_type": "type", "validated": true, "ani": 80.4215, "matched_fragments": 783, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium rosettiformans", "strain": "strain=DSM 26376", "accession": "GCA_014202175.1", "taxid": 1368430, "species_taxid": 1368430, "relation_to_type": "type", "validated": true, "ani": 80.3666, "matched_fragments": 700, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium rosettiformans", "strain": "strain=W3", "accession": "GCA_004912135.1", "taxid": 1368430, "species_taxid": 1368430, "relation_to_type": "type", "validated": true, "ani": 80.2988, "matched_fragments": 705, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium wuzhouense", "strain": "strain=W44", "accession": "GCA_003205195.1", "taxid": 1986026, "species_taxid": 1986026, "relation_to_type": "type", "validated": true, "ani": 80.2151, "matched_fragments": 696, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter lividus", "strain": "strain=DSM 25528", "accession": "GCA_003337715.1", "taxid": 1197950, "species_taxid": 1197950, "relation_to_type": "type", "validated": true, "ani": 80.1373, "matched_fragments": 710, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ciceribacter ferrooxidans", "strain": "strain=F8825", "accession": "GCA_004137355.1", "taxid": 2509717, "species_taxid": 2509717, "relation_to_type": "type", "validated": true, "ani": 80.1105, "matched_fragments": 720, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium glycinendophyticum", "strain": "strain=CL12", "accession": "GCA_006443685.1", "taxid": 2589807, "species_taxid": 2589807, "relation_to_type": "type", "validated": true, "ani": 79.9979, "matched_fragments": 676, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium rhizophilum", "strain": "strain=7209-2", "accession": "GCA_004912145.1", "taxid": 1850373, "species_taxid": 1850373, "relation_to_type": "type", "validated": true, "ani": 79.822, "matched_fragments": 704, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella granuli", "strain": "strain=DSM 18401", "accession": "GCA_004341885.1", "taxid": 323621, "species_taxid": 323621, "relation_to_type": "type", "validated": true, "ani": 79.5269, "matched_fragments": 674, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella yambaruensis", "strain": "strain=DSM 18801", "accession": "GCA_022899355.1", "taxid": 415996, "species_taxid": 415996, "relation_to_type": "type", "validated": true, "ani": 79.3925, "matched_fragments": 629, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 79.3066, "matched_fragments": 577, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neorhizobium galegae", "strain": "strain=HAMBI 540", "accession": "GCA_000731315.1", "taxid": 399, "species_taxid": 399, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1111, "matched_fragments": 583, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium populisoli", "strain": "strain=XQZ8", "accession": "GCA_019430945.1", "taxid": 2859785, "species_taxid": 2859785, "relation_to_type": "type", "validated": true, "ani": 78.9402, "matched_fragments": 565, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium redzepovicii", "strain": "strain=18T", "accession": "GCA_019793435.1", "taxid": 2867518, "species_taxid": 2867518, "relation_to_type": "type", "validated": true, "ani": 78.8732, "matched_fragments": 592, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium aethiopicum", "strain": "strain=HBR26", "accession": "GCA_900094625.1", "taxid": 1138170, "species_taxid": 1138170, "relation_to_type": "type", "validated": true, "ani": 78.8543, "matched_fragments": 557, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrobacterium leguminum", "strain": "strain=MOPV5", "accession": "GCA_015704895.1", "taxid": 2792015, "species_taxid": 2792015, "relation_to_type": "type", "validated": true, "ani": 78.6286, "matched_fragments": 518, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium skierniewicense", "strain": "strain=Ch11", "accession": "GCA_023757665.1", "taxid": 984260, "species_taxid": 984260, "relation_to_type": "type", "validated": true, "ani": 77.7983, "matched_fragments": 340, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium skierniewicense", "strain": "strain=DSM 26438", "accession": "GCA_014196515.1", "taxid": 984260, "species_taxid": 984260, "relation_to_type": "type", "validated": true, "ani": 77.7699, "matched_fragments": 339, "total_fragments": 1631, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_007992095.1", "gtdb_species": "s__Allorhizobium naphthalenivorans", "ani": 99.9804, "matched_fragments": 1564, "total_fragments": 1631, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Neorhizobium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.31", "min_intra_species_ani": "95.05", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.81", "num_clustered_genomes": 4, "status": "-" } ] }