{ "type": "genome", "identifier": "GCF_030161415.1", "organism": "Thalassotalea eurytherma", "title": "Thalassotalea eurytherma", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030161415.1", "bioproject": "PRJNA224116", "biosample": "SAMD00582808", "wgs_master": "BSSU00000000.1", "refseq_category": "reference genome", "taxid": "1144278", "species_taxid": "1144278", "organism_name": "Thalassotalea eurytherma", "infraspecific_name": "strain=JCM 18482", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/04/01", "asm_name": "ASM3016141v1", "asm_submitter": "Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University", "gbrs_paired_asm": "GCA_030161415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/161/415/GCF_030161415.1_ASM3016141v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3545925", "genome_size_ungapped": "3545925", "gc_percent": "39.500000", "replicon_count": "0", "scaffold_count": "35", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030161415.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3284", "protein_coding_gene_count": "3171", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-04-01", "dateModified": "2023-04-01", "datePublished": "2023-04-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Thalassotalea eurytherma" ], "sample_taxid": [ "1144278" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.006 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3545925", "Number of Sequences": "35", "Longest Sequences (bp)": "301505", "N50 (bp)": "237573", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.7", "Number of CDSs": "3213", "Average Protein Length": "327.6", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "64", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thalassotalea algicola", "strain": "strain=M1531", "accession": 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"matched_fragments": 146, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia echini", "strain": "strain=A3", "accession": "GCA_002843355.2", "taxid": 1982103, "species_taxid": 1982103, "relation_to_type": "type", "validated": true, "ani": 77.8797, "matched_fragments": 154, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cognaticolwellia mytili", "strain": "strain=KCTC 52417", "accession": "GCA_002104475.1", "taxid": 1888913, "species_taxid": 1888913, "relation_to_type": "type", "validated": true, "ani": 77.8204, "matched_fragments": 196, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia demingiae", "strain": "strain=ACAM 459", "accession": "GCA_007954275.1", "taxid": 89401, "species_taxid": 89401, "relation_to_type": "type", "validated": true, "ani": 77.4637, "matched_fragments": 176, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nitrifigilis", "strain": "strain=NFV-1", "accession": "GCA_015686695.1", "taxid": 2789781, "species_taxid": 2789781, "relation_to_type": "type", "validated": true, "ani": 77.3852, "matched_fragments": 53, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia marinimaniae", "strain": "strain=MTCD1", "accession": "GCA_002207865.1", "taxid": 1513592, "species_taxid": 1513592, "relation_to_type": "type", "validated": true, "ani": 77.3598, "matched_fragments": 144, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photobacterium sanguinicancri", "strain": "strain=CECT 7579", "accession": "GCA_024346675.1", "taxid": 875932, "species_taxid": 875932, "relation_to_type": "type", "validated": true, "ani": 76.602, "matched_fragments": 52, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella basaltis", "strain": "strain=KCTC 22121", "accession": "GCA_023283885.1", "taxid": 472183, "species_taxid": 472183, "relation_to_type": "type", "validated": true, "ani": 76.5778, "matched_fragments": 65, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella inventionis", "strain": "strain=KCTC 42807", "accession": "GCA_023283595.1", "taxid": 1738770, "species_taxid": 1738770, "relation_to_type": "type", "validated": true, "ani": 76.4198, "matched_fragments": 61, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella saliphila", "strain": "strain=KCTC 62131", "accession": "GCA_023283695.1", "taxid": 2282698, "species_taxid": 2282698, "relation_to_type": "type", "validated": true, "ani": 76.1427, "matched_fragments": 64, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, 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