{
    "type": "genome",
    "identifier": "GCF_030161735.1",
    "organism": "Alicyclobacillus fastidiosus",
    "title": "Alicyclobacillus fastidiosus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_030161735.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00582125",
        "wgs_master": "BSUT00000000.1",
        "refseq_category": "na",
        "taxid": "392011",
        "species_taxid": "392011",
        "organism_name": "Alicyclobacillus fastidiosus",
        "infraspecific_name": "strain=NBRC 103109",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/03/24",
        "asm_name": "ASM3016173v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_030161735.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/161/735/GCF_030161735.1_ASM3016173v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6534721",
        "genome_size_ungapped": "6534721",
        "gc_percent": "51.000000",
        "replicon_count": "0",
        "scaffold_count": "23",
        "contig_count": "23",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_030161735.1-RS_2024_06_02",
        "annotation_date": "2024-06-02",
        "total_gene_count": "6669",
        "protein_coding_gene_count": "6014",
        "non_coding_gene_count": "190",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-03-24",
    "dateModified": "2023-03-24",
    "datePublished": "2023-03-24",
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        "sample_count": 1,
        "sample_organism": [
            "Alicyclobacillus fastidiosus"
        ],
        "sample_taxid": [
            "392011"
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        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.853 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
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    "data_type": "G",
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        "Total Sequence Length (bp)": "6534721",
        "Number of Sequences": "23",
        "Longest Sequences (bp)": "5761446",
        "N50 (bp)": "5761446",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "50.9",
        "Number of CDSs": "6813",
        "Average Protein Length": "250.9",
        "Coding Ratio (%)": "78.5",
        "Number of rRNAs": "47",
        "Number of tRNAs": "138",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
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                "organism_name": "Alicyclobacillus acidoterrestris",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Alicyclobacillus acidoterrestris",
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                "species_taxid": 1450,
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Alicyclobacillus suci",
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                "ani": 78.9643,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alicyclobacillus acidocaldarius subsp. acidocaldarius",
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                "species_taxid": 405212,
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                "validated": true,
                "ani": 78.2804,
                "matched_fragments": 77,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alicyclobacillus vulcanalis",
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                "species_taxid": 252246,
                "relation_to_type": "type",
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                "matched_fragments": 70,
                "total_fragments": 2165,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alicyclobacillus sendaiensis",
                "strain": "strain=NBRC 100866",
                "accession": "GCA_001552675.1",
                "taxid": 192387,
                "species_taxid": 192387,
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                "ani": 76.484,
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                "total_fragments": 2165,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCF_000444055.1",
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                "matched_fragments": 392,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Alicyclobacillales;f__Alicyclobacillaceae;g__Alicyclobacillus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_007991715.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Alicyclobacillales;f__Alicyclobacillaceae;g__Alicyclobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
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            },
            {
                "accession": "GCF_000024285.1",
                "gtdb_species": "s__Alicyclobacillus acidocaldarius",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Alicyclobacillales;f__Alicyclobacillaceae;g__Alicyclobacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_001447355.1",
                "gtdb_species": "s__Alicyclobacillus tengchongensis",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Alicyclobacillales;f__Alicyclobacillaceae;g__Alicyclobacillus",
                "ani_circumscription_radius": 95.6061,
                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000173835.1",
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                "mean_intra_species_ani": "N/A",
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            },
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                "mean_intra_species_ani": "N/A",
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Alicyclobacillales;f__Alicyclobacillaceae;g__Alicyclobacillus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.046,
        "cell_length": 0.602,
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        "growth_tmp": 45.0,
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        "rRNA16S_genes": 6.0,
        "tRNA_genes": 63.667,
        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Alicyclobacillus",
        "fastidiosus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}