{ "type": "genome", "identifier": "GCF_030161835.1", "organism": "Shewanella glacialipiscicola", "title": "Shewanella glacialipiscicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030161835.1", "bioproject": "PRJNA224116", "biosample": "SAMD00582132", "wgs_master": "BSUY00000000.1", "refseq_category": "na", "taxid": "614069", "species_taxid": "614069", "organism_name": "Shewanella glacialipiscicola", "infraspecific_name": "strain=NBRC 102030", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/03/24", "asm_name": "ASM3016183v1", "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)", "gbrs_paired_asm": "GCA_030161835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/161/835/GCF_030161835.1_ASM3016183v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4614570", "genome_size_ungapped": "4614570", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030161835.1-RS_2024_06_02", "annotation_date": "2024-06-02", "total_gene_count": "4142", "protein_coding_gene_count": "3502", "non_coding_gene_count": "174", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-03-24", "dateModified": "2023-03-24", "datePublished": "2023-03-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Shewanella glacialipiscicola" ], "sample_taxid": [ "614069" ], "sample_host_organism": [], 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella seohaensis", "strain": "strain=CCUG 60900", "accession": "GCA_023283775.1", "taxid": 755175, "species_taxid": 755175, "relation_to_type": "type", "validated": true, "ani": 80.4259, "matched_fragments": 795, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella seohaensis", "strain": "strain=KCTC 23556", "accession": "GCA_025449215.1", "taxid": 755175, "species_taxid": 755175, "relation_to_type": "type", "validated": true, "ani": 80.2948, "matched_fragments": 800, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella saliphila", "strain": "strain=KCTC 62131", "accession": "GCA_023283695.1", "taxid": 2282698, "species_taxid": 2282698, "relation_to_type": "type", "validated": true, "ani": 78.6572, "matched_fragments": 280, "total_fragments": 1535, "ani_threshold": 95, "status": "below_threshold" } ], 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"status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.041, "doubling_h": 0.077, "growth_tmp": 25.0, "optimum_tmp": 25.0, "optimum_ph": 7.147, "genome_size": 4868941.65, "gc_content": 46.142, "coding_genes": 4161.776, "rRNA16S_genes": 9.437, "tRNA_genes": 107.731, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": 0.333, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.812, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.187, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Shewanella", "glacialipiscicola" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }