{ "type": "genome", "identifier": "GCF_030250085.1", "organism": "Campylobacter felis", "title": "Campylobacter felis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Center for Disease Control and Prevention", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030250085.1", "bioproject": "PRJNA224116", "biosample": "SAMN30456134", "wgs_master": "JANURX000000000.1", "refseq_category": "reference genome", "taxid": "2974565", "species_taxid": "2974565", "organism_name": "Campylobacter felis", "infraspecific_name": "strain=XJK22-1", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/06/09", "asm_name": "ASM3025008v1", "asm_submitter": "Chinese Center for Disease Control and Prevention", "gbrs_paired_asm": "GCA_030250085.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/250/085/GCF_030250085.1_ASM3025008v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1700455", "genome_size_ungapped": "1700425", "gc_percent": "35.000000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030250085.1-RS_2024_06_09", "annotation_date": "2024-06-09", "total_gene_count": "1826", "protein_coding_gene_count": "1720", "non_coding_gene_count": "56", "pubmed_id": "37110394" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-06-09", "dateModified": "2023-06-09", "datePublished": "2023-06-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Campylobacter felis" ], "sample_taxid": [ "2974565" ], "sample_host_organism": [ "cat" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Beijing" ], "sample_host_location_id": [], "data_size": "0.467 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1700455", "Number of Sequences": "42", "Longest Sequences (bp)": "238124", "N50 (bp)": "136473", "Gap Ratio (%)": "0.001764", "GCcontent (%)": "35.0", "Number of CDSs": "1727", "Average Protein Length": "300.1", "Coding Ratio (%)": "91.4", "Number of rRNAs": "0", "Number of tRNAs": "42", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Campylobacter upsaliensis", "strain": "strain=DSM 5365", "accession": "GCA_000620965.1", "taxid": 28080, "species_taxid": 28080, 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"coccobacillus_cell_shape": 0.05, "vibrio_cell_shape": 0.1, "spiral_cell_shape": 0.5 }, "_genome_taxon": [ "Campylobacter", "felis" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }