{ "type": "genome", "identifier": "GCF_030268005.1", "organism": "Microbacterium arabinogalactanolyticum", "title": "Microbacterium arabinogalactanolyticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Laboratory of applied carbohydrate chemistry, Department of food science and biotechnology, Faculty of agriculture, Kagoshima university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030268005.1", "bioproject": "PRJNA224116", "biosample": "SAMD00521460", "wgs_master": "BRZC00000000.1", "refseq_category": "reference genome", "taxid": "69365", "species_taxid": "69365", "organism_name": "Microbacterium arabinogalactanolyticum", "infraspecific_name": "strain=JCM9171", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/04/15", "asm_name": "ASM3026800v1", "asm_submitter": "Laboratory of applied carbohydrate chemistry, Department of food science and biotechnology, Faculty of agriculture, Kagoshima university", "gbrs_paired_asm": "GCA_030268005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/268/005/GCF_030268005.1_ASM3026800v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3665624", "genome_size_ungapped": "3664439", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030268005.1-RS_2024_06_13", "annotation_date": "2024-06-13", "total_gene_count": "3493", "protein_coding_gene_count": "3430", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-04-15", "dateModified": "2023-04-15", "datePublished": "2023-04-15", 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aerolatum", "strain": "strain=CCM 4955", "accession": "GCA_014635005.1", "taxid": 153731, "species_taxid": 153731, "relation_to_type": "type", "validated": true, "ani": 81.3744, "matched_fragments": 587, "total_fragments": 1220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium liquefaciens", "strain": "strain=NBRC 15037", "accession": "GCA_006539765.1", "taxid": 33918, "species_taxid": 33918, "relation_to_type": "type", "validated": true, "ani": 81.2153, "matched_fragments": 585, "total_fragments": 1220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium liquefaciens", "strain": "strain=JCM 3879", "accession": "GCA_014648755.1", "taxid": 33918, "species_taxid": 33918, "relation_to_type": "type", "validated": true, "ani": 81.2131, "matched_fragments": 579, "total_fragments": 1220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium pseudoresistens", "strain": "strain=DSM 22185", "accession": "GCA_013409745.1", "taxid": 640634, "species_taxid": 640634, "relation_to_type": "type", "validated": true, "ani": 81.1389, "matched_fragments": 517, "total_fragments": 1220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium resistens", "strain": "strain=NBRC 103078", "accession": "GCA_001552355.1", "taxid": 156977, "species_taxid": 156977, "relation_to_type": "type", "validated": true, "ani": 80.9901, "matched_fragments": 582, "total_fragments": 1220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium hydrocarbonoxydans", "strain": "strain=NBRC 103074", "accession": "GCA_001552455.1", "taxid": 273678, "species_taxid": 273678, "relation_to_type": "suspected-type", "validated": true, "ani": 80.9489, "matched_fragments": 627, "total_fragments": 1220, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium hydrocarbonoxydans", "strain": "strain=DSM 16089", "accession": 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.344, "cell_length": -0.025, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 29.019, "optimum_ph": 7.341, "genome_size": 3469503.118, "gc_content": 69.764, "coding_genes": 3206.916, "rRNA16S_genes": 1.75, "tRNA_genes": 50.166, "gram_stain": 1.0, "sporulation": 0.111, "motility": 0.289, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.977, "coccus_cell_shape": 0.022, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Microbacterium", "arabinogalactanolyticum" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }