{ "type": "genome", "identifier": "GCF_030286065.1", "organism": "Aeromonas hydrophila", "title": "Aeromonas hydrophila", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Jinan university", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030286065.1", "bioproject": "PRJNA224116", "biosample": "SAMN35638130", "wgs_master": "JASWES000000000.1", "refseq_category": "na", "taxid": "644", "species_taxid": "644", "organism_name": "Aeromonas hydrophila", "infraspecific_name": "strain=ATCC 7966", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/06/18", "asm_name": "ASM3028606v1", "asm_submitter": "Jinan university", "gbrs_paired_asm": "GCA_030286065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/286/065/GCF_030286065.1_ASM3028606v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4739633", "genome_size_ungapped": "4738333", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "143", "contig_count": "143", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030286065.1-RS_2024_06_19", "annotation_date": "2024-06-19", "total_gene_count": "4434", "protein_coding_gene_count": "4261", "non_coding_gene_count": "100", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-06-18", "dateModified": "2023-06-18", "datePublished": "2023-06-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Aeromonas hydrophila" ], "sample_taxid": [ "644" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "1.329 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.48, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4739633", "Number of Sequences": "143", "Longest Sequences (bp)": "404862", "N50 (bp)": "167190", "Gap Ratio (%)": "0.027428", "GCcontent (%)": "61.5", "Number of CDSs": "4299", "Average Protein Length": "321.3", "Coding Ratio (%)": "87.4", "Number of rRNAs": "4", "Number of tRNAs": "91", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aeromonas hydrophila subsp. hydrophila", "strain": "strain=ATCC 7966", "accession": "GCA_000014805.1", "taxid": 196023, "species_taxid": 644, "relation_to_type": "type", "validated": true, "ani": 96.9122, "matched_fragments": 1428, "total_fragments": 1546, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aeromonas hydrophila", "strain": "strain=ATCC 7966", "accession": "GCA_001999685.1", "taxid": 644, "species_taxid": 644, "relation_to_type": "type", "validated": true, "ani": 96.9078, "matched_fragments": 1380, "total_fragments": 1546, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aeromonas hydrophila", "strain": "strain=ATCC 7966", "accession": "GCA_018360025.1", "taxid": 644, "species_taxid": 644, "relation_to_type": "type", "validated": true, "ani": 96.8985, "matched_fragments": 1418, "total_fragments": 1546, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aeromonas hydrophila", "strain": "strain=NCTC8049", "accession": "GCA_900445175.1", "taxid": 644, "species_taxid": 644, "relation_to_type": "type", "validated": true, "ani": 96.861, "matched_fragments": 1447, "total_fragments": 1546, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aeromonas hydrophila subsp. ranae", "strain": "strain=CIP 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"status": "below_threshold" } ], "cc_result": { "completeness": 99.48, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000014805.1", "gtdb_species": "s__Aeromonas hydrophila", "ani": 96.9122, "matched_fragments": 1428, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.01", "min_intra_species_ani": "96.24", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 120, "status": "conclusive" }, { "accession": "GCF_000820305.1", "gtdb_species": "s__Aeromonas dhakensis", "ani": 93.7988, "matched_fragments": 1371, "total_fragments": 1546, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Aeromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.35", "min_intra_species_ani": 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