{ "tc_result": [ { "organism_name": "Protaetiibacter intestinalis", "strain": "strain=2DFWR-13", "accession": "GCA_003627075.1", "taxid": 2419774, "species_taxid": 2419774, "relation_to_type": "type", "validated": true, "ani": 79.5239, "matched_fragments": 395, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces binzhouensis", "strain": "strain=CGMCC 4.7180", "accession": "GCA_004135055.1", "taxid": 1817495, "species_taxid": 1817495, "relation_to_type": "type", "validated": true, "ani": 79.4583, "matched_fragments": 300, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter californiensis", "strain": "strain=CFBP 8216", "accession": "GCA_003576155.1", "taxid": 1401995, "species_taxid": 1401995, "relation_to_type": "type", "validated": true, "ani": 79.4368, "matched_fragments": 311, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. tessellarius", "strain": "strain=ATCC 33566", "accession": "GCA_021922985.1", "taxid": 31965, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 79.3521, "matched_fragments": 406, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. tessellarius", "strain": "strain=ATCC 33566", "accession": "GCA_002240635.1", "taxid": 31965, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 79.3308, "matched_fragments": 426, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter phaseoli", "strain": "strain=LPPA 982", "accession": "GCA_021922925.1", "taxid": 1734031, "species_taxid": 1734031, "relation_to_type": "type", "validated": true, "ani": 79.3056, "matched_fragments": 413, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. insidiosus", "strain": "strain=ATCC 10253", "accession": "GCA_003076355.1", "taxid": 33014, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 79.2531, "matched_fragments": 409, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leifsonia aquatica", "strain": "strain=ATCC 14665", "accession": "GCA_000469485.1", "taxid": 144185, "species_taxid": 144185, "relation_to_type": "type", "validated": true, "ani": 79.2528, "matched_fragments": 321, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Protaetiibacter larvae", "strain": "strain=KACC 19322", "accession": "GCA_008365275.1", "taxid": 2592654, "species_taxid": 2592654, "relation_to_type": "type", "validated": true, "ani": 79.2265, "matched_fragments": 349, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rathayibacter festucae", "strain": "strain=DSM 15932", "accession": "GCA_004011135.1", "taxid": 110937, "species_taxid": 110937, "relation_to_type": "type", "validated": true, "ani": 79.1334, "matched_fragments": 471, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis", "strain": "strain=LMG7333", "accession": "GCA_021216655.1", "taxid": 28447, "species_taxid": 28447, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1236, "matched_fragments": 407, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis subsp. michiganensis", "strain": "strain=LMG 7333", "accession": "GCA_002240575.1", "taxid": 33013, "species_taxid": 28447, "relation_to_type": "type", "validated": true, "ani": 79.0772, "matched_fragments": 417, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Clavibacter michiganensis", "strain": "strain=VKM Ac-1403", "accession": "GCA_900168345.1", "taxid": 28447, "species_taxid": 28447, "relation_to_type": "suspected-type", "validated": true, "ani": 79.064, "matched_fragments": 410, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microterricola viridarii", "strain": "strain=DSM 21772", "accession": "GCA_900104895.1", "taxid": 412690, "species_taxid": 412690, "relation_to_type": "type", "validated": true, "ani": 79.0638, "matched_fragments": 369, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbiconiux flava", "strain": "strain=DSM 26474", "accession": "GCA_013409865.1", "taxid": 881268, "species_taxid": 881268, "relation_to_type": "type", "validated": true, "ani": 78.9899, "matched_fragments": 433, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leifsonia naganoensis", "strain": "strain=DSM 15166", "accession": "GCA_013410615.1", "taxid": 150025, "species_taxid": 150025, "relation_to_type": "type", "validated": true, "ani": 78.9747, "matched_fragments": 415, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leifsonia soli", "strain": "strain=DSM 23871", "accession": "GCA_013408745.1", "taxid": 582665, "species_taxid": 582665, "relation_to_type": "type", "validated": true, "ani": 78.9466, "matched_fragments": 388, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces mariniharenae", "strain": "strain=NEAU-184", "accession": "GCA_008122505.1", "taxid": 2604423, "species_taxid": 2604423, "relation_to_type": "type", "validated": true, "ani": 78.9154, "matched_fragments": 463, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces tardus", "strain": "strain=SJ-23", "accession": "GCA_003710805.1", "taxid": 2583849, "species_taxid": 2583849, "relation_to_type": "type", "validated": true, "ani": 78.9147, "matched_fragments": 443, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leifsonia shinshuensis", "strain": "strain=DSM 15165", "accession": "GCA_013410375.1", "taxid": 150026, "species_taxid": 150026, "relation_to_type": "type", "validated": true, "ani": 78.9047, "matched_fragments": 450, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leifsonia aquatica", "strain": "strain=DSM 20146", "accession": "GCA_014190775.1", "taxid": 144185, "species_taxid": 144185, "relation_to_type": "type", "validated": true, "ani": 78.9032, "matched_fragments": 410, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cryobacterium tepidiphilum", "strain": "strain=NEAU-85", "accession": "GCA_003716325.1", "taxid": 2486026, "species_taxid": 2486026, "relation_to_type": "type", "validated": true, "ani": 78.833, "matched_fragments": 341, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces fucosus", "strain": "strain=CCUG 35506", "accession": "GCA_004134865.1", "taxid": 41985, "species_taxid": 41985, "relation_to_type": "type", "validated": true, "ani": 78.8234, "matched_fragments": 388, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces bracchium", "strain": "strain=JCM 11433", "accession": "GCA_009709675.1", "taxid": 88376, "species_taxid": 88376, "relation_to_type": "type", "validated": true, "ani": 78.7295, "matched_fragments": 427, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rathayibacter tanaceti", "strain": "strain=VKM Ac-2596", "accession": "GCA_001634385.1", "taxid": 1671680, "species_taxid": 1671680, "relation_to_type": "type", "validated": true, "ani": 78.6488, "matched_fragments": 337, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agrococcus terreus", "strain": "strain=CGMCC 1.6960", "accession": "GCA_014645235.1", "taxid": 574649, "species_taxid": 574649, "relation_to_type": "type", "validated": true, "ani": 78.5917, "matched_fragments": 340, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Labedella endophytica", "strain": "strain=EGI 6500705", "accession": "GCA_003990045.1", "taxid": 1523160, "species_taxid": 1523160, "relation_to_type": "type", "validated": true, "ani": 78.5631, "matched_fragments": 320, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Agromyces marinus", "strain": "strain=DSM 26151", "accession": "GCA_021442325.1", "taxid": 1389020, "species_taxid": 1389020, "relation_to_type": "type", "validated": true, "ani": 78.5587, "matched_fragments": 366, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium citreum", "strain": "strain=JCM 1345", "accession": "GCA_014646735.1", "taxid": 2036, "species_taxid": 2036, "relation_to_type": "type", "validated": true, "ani": 78.4393, "matched_fragments": 350, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigoribacterium faeni", "strain": "strain=DSM 10309", "accession": "GCA_014137965.1", "taxid": 145483, "species_taxid": 145483, "relation_to_type": "type", "validated": true, "ani": 78.4076, "matched_fragments": 379, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Curtobacterium citreum", "strain": "strain=LMG8786T", "accession": "GCA_024997915.1", "taxid": 2036, "species_taxid": 2036, "relation_to_type": "type", "validated": true, "ani": 78.39, "matched_fragments": 359, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Frigoribacterium faeni", "strain": "strain=NBRC 103066", "accession": "GCA_007988805.1", "taxid": 145483, "species_taxid": 145483, "relation_to_type": "type", "validated": true, "ani": 78.3617, "matched_fragments": 382, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Okibacterium fritillariae", "strain": "strain=VKM Ac-2059", "accession": "GCA_900167575.1", "taxid": 123320, "species_taxid": 123320, "relation_to_type": "type", "validated": true, "ani": 78.3057, "matched_fragments": 309, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter chironomi", "strain": "strain=DSM 19883", "accession": "GCA_000421845.1", "taxid": 491918, "species_taxid": 491918, "relation_to_type": "type", "validated": true, "ani": 78.0226, "matched_fragments": 253, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microbacterium foliorum", "strain": "strain=NRRL B-24224", "accession": "GCA_003367705.1", "taxid": 104336, "species_taxid": 104336, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8298, "matched_fragments": 299, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leucobacter muris", "strain": "strain=DSM 101948", "accession": "GCA_004028235.1", "taxid": 1935379, "species_taxid": 1935379, "relation_to_type": "type", "validated": true, "ani": 77.79, "matched_fragments": 274, "total_fragments": 1130, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 4.17, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_017916505.1", "gtdb_species": "s__Naasia sp017916505", "ani": 82.9301, "matched_fragments": 697, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Naasia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017916515.1", "gtdb_species": "s__Naasia sp017916515", "ani": 81.8427, "matched_fragments": 612, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Naasia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004801885.1", "gtdb_species": "s__Naasia lichenicola", "ani": 80.0575, "matched_fragments": 517, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Naasia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003097495.1", "gtdb_species": "s__Naasia flavum", "ani": 79.6741, "matched_fragments": 453, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Naasia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003627075.1", "gtdb_species": "s__Protaetiibacter intestinalis", "ani": 79.4681, "matched_fragments": 399, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Protaetiibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001280205.1", "gtdb_species": "s__Clavibacter capsici", "ani": 79.3782, "matched_fragments": 394, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Clavibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.16", "min_intra_species_ani": "95.31", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.91", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_002240635.1", "gtdb_species": "s__Clavibacter tessellarius", "ani": 79.37, "matched_fragments": 422, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Clavibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.95", "min_intra_species_ani": "95.37", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002797715.1", "gtdb_species": "s__Diaminobutyricimonas aerilata", "ani": 79.2907, "matched_fragments": 432, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Diaminobutyricimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000355695.1", "gtdb_species": "s__Clavibacter nebraskensis", "ani": 79.2818, "matched_fragments": 407, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Clavibacter", "ani_circumscription_radius": 95.1408, "mean_intra_species_ani": "99.97", "min_intra_species_ani": "99.95", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_001725325.1", "gtdb_species": "s__Rhodoglobus sp001725325", "ani": 79.1845, "matched_fragments": 416, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rhodoglobus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004011135.1", "gtdb_species": "s__Rathayibacter festucae", "ani": 79.164, "matched_fragments": 475, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Rathayibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.98", "min_intra_species_ani": "96.51", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 11, "status": "-" }, { "accession": "GCF_001647635.1", "gtdb_species": "s__Leifsonia xyli_A", "ani": 79.078, "matched_fragments": 430, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leifsonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900168345.1", "gtdb_species": "s__Clavibacter michiganensis", "ani": 79.0633, "matched_fragments": 410, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Clavibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.05", "min_intra_species_ani": "95.09", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.88", "num_clustered_genomes": 49, "status": "-" }, { "accession": "GCF_009765225.1", "gtdb_species": "s__Leifsonia sp009765225", "ani": 79.0273, "matched_fragments": 387, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Leifsonia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003710805.1", "gtdb_species": "s__Agromyces tardus", "ani": 78.9539, "matched_fragments": 439, "total_fragments": 1130, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Microbacteriaceae;g__Agromyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006517535.1", "gtdb_species": "s__Schumannella sp006517535", "ani": 78.9221, "matched_fragments": 411, "total_fragments": 1130, "gtdb_taxonomy": 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