{
    "type": "genome",
    "identifier": "GCF_030296755.1",
    "organism": "Methylophaga marina",
    "title": "Methylophaga marina",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_030296755.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00582133",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "45495",
        "species_taxid": "45495",
        "organism_name": "Methylophaga marina",
        "infraspecific_name": "strain=NBRC 102421",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/03/24",
        "asm_name": "ASM3029675v1",
        "asm_submitter": "WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)",
        "gbrs_paired_asm": "GCA_030296755.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/296/755/GCF_030296755.1_ASM3029675v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3106976",
        "genome_size_ungapped": "3106976",
        "gc_percent": "44.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_030296755.1-RS_2024_06_21",
        "annotation_date": "2024-06-21",
        "total_gene_count": "3147",
        "protein_coding_gene_count": "2947",
        "non_coding_gene_count": "57",
        "pubmed_id": "30832757"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-03-24",
    "dateModified": "2023-03-24",
    "datePublished": "2023-03-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Methylophaga marina"
        ],
        "sample_taxid": [
            "45495"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "0.885 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3106976",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3106976",
        "N50 (bp)": "3106976",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "43.8",
        "Number of CDSs": "3159",
        "Average Protein Length": "298.1",
        "Coding Ratio (%)": "90.9",
        "Number of rRNAs": "9",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Methylophaga sulfidovorans",
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                "accession": "GCA_900114205.1",
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                "species_taxid": 45496,
                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            {
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                "taxid": 230105,
                "species_taxid": 230105,
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                "validated": true,
                "ani": 84.0487,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylophaga thiooxydans",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylophaga nitratireducenticrescens",
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                "taxid": 754476,
                "species_taxid": 754476,
                "relation_to_type": "type",
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                "ani": 78.9484,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylophaga pinxianii",
                "strain": "strain=TMB456",
                "accession": "GCA_020447225.1",
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                "species_taxid": 2881052,
                "relation_to_type": "type",
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                "ani": 77.7913,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylophaga lonarensis",
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                "accession": "GCA_000349205.1",
                "taxid": 999151,
                "species_taxid": 999151,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.2659,
                "matched_fragments": 103,
                "total_fragments": 1035,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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        "gtdb_result": [
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                "accession": "GCA_002706095.1",
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                "matched_fragments": 939,
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.12",
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                "mean_intra_species_af": "0.92",
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                "status": "conclusive"
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "accession": "GCF_000214595.1",
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                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCA_011052985.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrosococcales;f__Methylophagaceae;g__Methylophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_002163115.1",
                "gtdb_species": "s__41-12-T18 sp002163115",
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                "matched_fragments": 93,
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                "mean_intra_species_ani": "N/A",
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                "accession": "GCA_905479985.1",
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.699,
        "cell_length": 0.0,
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        "growth_tmp": 30.0,
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        "genome_size": 2881741.8,
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        "rRNA16S_genes": 3.0,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
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        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 1.0,
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    "_genome_taxon": [
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        "marina"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}