{ "type": "genome", "identifier": "GCF_030296775.1", "organism": "Claveliimonas bilis", "title": "Claveliimonas bilis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "RIKEN BioResource Research Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030296775.1", "bioproject": "PRJNA224116", "biosample": "SAMD00579469", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "3028070", "species_taxid": "3028070", "organism_name": "Claveliimonas bilis", "infraspecific_name": "strain=12BBH14", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/05/11", "asm_name": "ASM3029677v1", "asm_submitter": "RIKEN BioResource Research Center", "gbrs_paired_asm": "GCA_030296775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/296/775/GCF_030296775.1_ASM3029677v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3111590", "genome_size_ungapped": "3111590", "gc_percent": "44.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-29", "total_gene_count": "3017", "protein_coding_gene_count": "2888", "non_coding_gene_count": "71", "pubmed_id": "37737068" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-05-11", "dateModified": "2023-05-11", "datePublished": "2023-05-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Claveliimonas bilis" ], "sample_taxid": [ "3028070" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "0.875 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3111590", "Number of Sequences": "1", "Longest Sequences (bp)": "3111590", "N50 (bp)": "3111590", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "44.1", "Number of CDSs": "2973", "Average Protein Length": "312.9", "Coding Ratio (%)": "89.7", "Number of rRNAs": "8", "Number of tRNAs": "55", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mediterraneibacter catenae", "strain": "strain=SW178", "accession": "GCA_008691045.1", "taxid": 2594882, "species_taxid": 2594882, "relation_to_type": "type", "validated": true, "ani": 79.2897, "matched_fragments": 112, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Coprococcus phoceensis", "strain": "strain=Marseille-P3062", "accession": "GCA_900104635.1", "taxid": 1870993, "species_taxid": 1870993, "relation_to_type": "type", "validated": true, "ani": 79.0275, "matched_fragments": 109, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia wexlerae", "strain": "strain=DSM 19850", "accession": "GCA_025148125.1", "taxid": 418240, "species_taxid": 418240, "relation_to_type": "suspected-type", "validated": true, "ani": 79.0072, "matched_fragments": 92, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] scindens", "strain": "strain=ATCC 35704", "accession": "GCA_004295125.1", "taxid": 29347, "species_taxid": 29347, "relation_to_type": "suspected-type", "validated": true, "ani": 78.8209, "matched_fragments": 175, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_002959615.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 78.7656, "matched_fragments": 142, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_009831375.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 78.6659, "matched_fragments": 142, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] scindens", "strain": "strain=ATCC 35704", "accession": "GCA_000154505.1", "taxid": 29347, "species_taxid": 29347, "relation_to_type": "suspected-type", "validated": true, "ani": 78.6216, "matched_fragments": 171, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia massiliensis", "strain": "strain=GD9", "accession": "GCA_001487165.1", "taxid": 1737424, "species_taxid": 1737424, "relation_to_type": "type", "validated": true, "ani": 78.5892, "matched_fragments": 81, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mediterraneibacter butyricigenes", "strain": "strain=KCTC 15684", "accession": "GCA_003574295.1", "taxid": 2316025, "species_taxid": 2316025, "relation_to_type": "type", "validated": true, "ani": 78.5681, "matched_fragments": 132, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=JCM6515", "accession": "GCA_008121495.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5606, "matched_fragments": 142, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia argi", "strain": "strain=KCTC 15426", "accession": "GCA_003287895.1", "taxid": 1912897, "species_taxid": 1912897, "relation_to_type": "type", "validated": true, "ani": 78.5602, "matched_fragments": 95, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] hylemonae", "strain": "strain=DSM 15053", "accession": "GCA_008281175.1", "taxid": 89153, "species_taxid": 89153, "relation_to_type": "type", "validated": true, "ani": 78.5177, "matched_fragments": 140, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_025152275.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "type", "validated": true, "ani": 78.4325, "matched_fragments": 152, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea formicigenerans", "strain": "strain=ATCC 27755", "accession": "GCA_025150245.1", "taxid": 39486, "species_taxid": 39486, "relation_to_type": "suspected-type", "validated": true, "ani": 78.4035, "matched_fragments": 144, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_000169475.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 78.3885, "matched_fragments": 139, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sporofaciens musculi", "strain": "strain=WCA-9-b2", "accession": "GCA_009830285.1", "taxid": 2681861, "species_taxid": 2681861, "relation_to_type": "type", "validated": true, "ani": 78.3868, "matched_fragments": 128, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalimonas umbilicata", "strain": "strain=EGH7", "accession": "GCA_003402615.1", "taxid": 1912855, "species_taxid": 1912855, "relation_to_type": "type", "validated": true, "ani": 78.3847, "matched_fragments": 107, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea formicigenerans", "strain": "strain=ATCC 27755", "accession": "GCA_000169235.1", "taxid": 39486, "species_taxid": 39486, "relation_to_type": "suspected-type", "validated": true, "ani": 78.219, "matched_fragments": 143, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dorea phocaeensis", "strain": "strain=Marseille-P4003", "accession": "GCA_900240315.1", "taxid": 2040291, "species_taxid": 2040291, "relation_to_type": "type", "validated": true, "ani": 78.1392, "matched_fragments": 150, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] lactaris", "strain": "strain=ATCC 29176", "accession": "GCA_025152405.1", "taxid": 46228, "species_taxid": 46228, "relation_to_type": "type", "validated": true, "ani": 78.1283, "matched_fragments": 115, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] torques", "strain": "strain=ATCC 27756", "accession": "GCA_000153925.1", "taxid": 33039, "species_taxid": 33039, "relation_to_type": "type", "validated": true, "ani": 78.0461, "matched_fragments": 103, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Coprococcus comes", "strain": "strain=ATCC 27758", "accession": "GCA_025149785.1", "taxid": 410072, "species_taxid": 410072, "relation_to_type": "type", "validated": true, "ani": 78.0372, "matched_fragments": 145, "total_fragments": 1037, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Clostridium] hylemonae", "strain": "strain=DSM 15053", "accession": "GCA_000156515.1", "taxid": 89153, "species_taxid": 89153, "relation_to_type": "type", 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