{ "type": "genome", "identifier": "GCF_030316605.1", "organism": "Spiroplasma ixodetis Y32", "title": "Spiroplasma ixodetis Y32", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Academia Sinica", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030316605.1", "bioproject": "PRJNA224116", "biosample": "SAMN04275153", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1276219", "species_taxid": "2141", "organism_name": "Spiroplasma ixodetis Y32", "infraspecific_name": "strain=Y32", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/06/21", "asm_name": "ASM3031660v1", "asm_submitter": "Academia Sinica", "gbrs_paired_asm": "GCA_030316605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/316/605/GCF_030316605.1_ASM3031660v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2231425", "genome_size_ungapped": "2231425", "gc_percent": "24.500000", "replicon_count": "6", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030316605.1-RS_2024_06_22", "annotation_date": "2024-06-22", "total_gene_count": "2913", "protein_coding_gene_count": "2813", "non_coding_gene_count": "36", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-06-21", "dateModified": "2023-06-21", "datePublished": "2023-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Spiroplasma ixodetis Y32" ], "sample_taxid": [ "1276219" ], "sample_host_organism": [ "Ixodes pacificus" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: southern Oregon" ], "sample_host_location_id": [], "data_size": "0.510 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2231425", "Number of Sequences": "6", "Longest Sequences (bp)": "2040288", "N50 (bp)": "2040288", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "24.4", "Number of CDSs": "3286", "Average Protein Length": "101.0", "Coding Ratio (%)": "44.6", "Number of rRNAs": "6", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spiroplasma citri", "strain": "strain=R8-A2", "accession": "GCA_001886855.1", "taxid": 2133, "species_taxid": 2133, "relation_to_type": "type", "validated": true, "ani": 75.7116, "matched_fragments": 73, "total_fragments": 741, 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