{ "type": "genome", "identifier": "GCF_030408395.1", "organism": "Corynebacterium aquatimens", "title": "Corynebacterium aquatimens", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bielefeld University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030408395.1", "bioproject": "PRJNA224116", "biosample": "SAMN13404508", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1190508", "species_taxid": "1190508", "organism_name": "Corynebacterium aquatimens", "infraspecific_name": "strain=DSM 45632", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/07/05", "asm_name": "ASM3040839v1", "asm_submitter": "Bielefeld University", "gbrs_paired_asm": "GCA_030408395.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/408/395/GCF_030408395.1_ASM3040839v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2524396", "genome_size_ungapped": "2524396", "gc_percent": "61.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030408395.1-RS_2024_07_07", "annotation_date": "2024-07-07", "total_gene_count": "2247", "protein_coding_gene_count": "2139", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-07-05", "dateModified": "2023-07-05", "datePublished": "2023-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium aquatimens" ], "sample_taxid": [ "1190508" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: City of Perth" ], "sample_host_location_id": [], "data_size": "0.709 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2524396", "Number of Sequences": "1", "Longest Sequences (bp)": "2524396", "N50 (bp)": "2524396", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.0", "Number of CDSs": "2222", "Average Protein Length": "339.5", "Coding Ratio (%)": "89.6", "Number of rRNAs": "9", "Number of tRNAs": "50", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium aquatimens", "strain": "strain=DSM 45632", "accession": "GCA_015752125.1", "taxid": 1190508, "species_taxid": 1190508, "relation_to_type": "type", "validated": true, "ani": 99.9972, "matched_fragments": 841, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium appendicis", "strain": "strain=DSM 44531", "accession": "GCA_900156665.1", "taxid": 163202, "species_taxid": 163202, "relation_to_type": "type", "validated": true, "ani": 79.3915, "matched_fragments": 293, "total_fragments": 841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium mycetoides", "strain": "strain=DSM 20632", "accession": "GCA_900103625.1", "taxid": 38302, "species_taxid": 38302, "relation_to_type": "type", "validated": true, "ani": 79.3727, "matched_fragments": 265, "total_fragments": 841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium sanguinis", "strain": "strain=CCUG 58655", "accession": "GCA_007641235.1", "taxid": 2594913, "species_taxid": 2594913, "relation_to_type": "type", "validated": true, "ani": 79.2217, "matched_fragments": 239, "total_fragments": 841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium senegalense", "strain": "strain=Marseille-P4329", "accession": "GCA_900411315.1", "taxid": 2080750, "species_taxid": 2080750, "relation_to_type": "type", "validated": true, "ani": 79.2001, "matched_fragments": 258, "total_fragments": 841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium bouchesdurhonense", "strain": "strain=SN14", "accession": "GCA_900078305.2", "taxid": 1720192, "species_taxid": 1720192, "relation_to_type": "type", "validated": true, "ani": 79.0713, "matched_fragments": 249, "total_fragments": 841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium tuscaniense", "strain": "strain=CCUG 51321T", "accession": "GCA_008693065.1", "taxid": 302449, "species_taxid": 302449, "relation_to_type": "type", "validated": true, "ani": 78.9646, "matched_fragments": 222, "total_fragments": 841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium riegelii", "strain": "strain=FDAARGOS_1114", "accession": "GCA_016728505.1", "taxid": 156976, "species_taxid": 156976, "relation_to_type": "type", "validated": true, "ani": 78.8607, "matched_fragments": 217, "total_fragments": 841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium qintianiae", "strain": "strain=MC1420", "accession": "GCA_011038645.2", "taxid": 2709392, "species_taxid": 2709392, "relation_to_type": "type", "validated": true, "ani": 78.3671, "matched_fragments": 221, "total_fragments": 841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium humireducens", "strain": "strain=NBRC 106098", "accession": "GCA_001571025.1", "taxid": 1223514, "species_taxid": 1223514, "relation_to_type": "type", "validated": true, "ani": 77.4515, "matched_fragments": 195, "total_fragments": 841, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium 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