{ "type": "genome", "identifier": "GCF_030408675.1", "organism": "Corynebacterium durum", "title": "Corynebacterium durum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bielefeld University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030408675.1", "bioproject": "PRJNA224116", "biosample": "SAMN03854665", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "61592", "species_taxid": "61592", "organism_name": "Corynebacterium durum", "infraspecific_name": "strain=DSM 45333", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/07/05", "asm_name": "ASM3040867v1", "asm_submitter": "Bielefeld University", "gbrs_paired_asm": "GCA_030408675.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/408/675/GCF_030408675.1_ASM3040867v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2786863", "genome_size_ungapped": "2786863", "gc_percent": "57.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030408675.1-RS_2024_07_07", "annotation_date": "2024-07-07", "total_gene_count": "2586", "protein_coding_gene_count": "2506", "non_coding_gene_count": "68", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-07-05", "dateModified": "2023-07-05", "datePublished": "2023-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium durum" ], "sample_taxid": [ "61592" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France: Institute of Bacteriology of Strasbourg" ], "sample_host_location_id": [], "data_size": "0.793 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2786863", "Number of Sequences": "1", "Longest Sequences (bp)": "2786863", "N50 (bp)": "2786863", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.2", "Number of CDSs": "2575", "Average Protein Length": "318.3", "Coding Ratio (%)": "88.2", "Number of rRNAs": "10", "Number of tRNAs": "51", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium durum", "strain": "strain=DSM 45333", "accession": "GCA_013410305.1", "taxid": 61592, "species_taxid": 61592, "relation_to_type": "type", "validated": true, "ani": 99.9992, "matched_fragments": 928, "total_fragments": 928, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium argentoratense", "strain": "strain=DSM 44202", "accession": "GCA_000590555.1", "taxid": 42817, "species_taxid": 42817, "relation_to_type": "type", "validated": true, "ani": 78.8824, "matched_fragments": 114, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032", "accession": "GCA_002847405.1", "taxid": 1718, "species_taxid": 1718, "relation_to_type": "type", "validated": true, "ani": 78.7161, "matched_fragments": 92, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium aquilae", "strain": "strain=S-613", "accession": "GCA_001941445.1", "taxid": 203263, "species_taxid": 203263, "relation_to_type": "type", "validated": true, "ani": 78.6597, "matched_fragments": 139, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032 substr. K051", "accession": "GCA_000382905.1", "taxid": 1718, "species_taxid": 1718, "relation_to_type": "type", "validated": true, "ani": 78.6352, "matched_fragments": 91, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium vitaeruminis", "strain": "strain=DSM 20294", "accession": "GCA_000550805.1", "taxid": 38305, "species_taxid": 38305, "relation_to_type": "type", "validated": true, "ani": 78.5166, "matched_fragments": 139, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium kalinowskii", "strain": "strain=1959", "accession": "GCA_009734385.1", "taxid": 2675216, "species_taxid": 2675216, "relation_to_type": "type", "validated": true, "ani": 78.5005, "matched_fragments": 109, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032", "accession": "GCA_000011325.1", "taxid": 1718, "species_taxid": 1718, "relation_to_type": "type", "validated": true, "ani": 78.28, "matched_fragments": 89, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium occultum", "strain": "strain=2039", "accession": "GCA_009734425.1", "taxid": 2675219, "species_taxid": 2675219, "relation_to_type": "type", "validated": true, "ani": 78.2082, "matched_fragments": 119, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium humireducens", "strain": "strain=DSM 45392", "accession": "GCA_000819445.1", "taxid": 1223514, "species_taxid": 1223514, "relation_to_type": "type", "validated": true, "ani": 78.1676, "matched_fragments": 117, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium halotolerans", "strain": "strain=YIM 70093 = DSM 44683", "accession": "GCA_000341345.1", "taxid": 225326, "species_taxid": 225326, "relation_to_type": "type", "validated": true, "ani": 78.0557, "matched_fragments": 117, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium haemomassiliense", "strain": "strain=Marseille-Q3615", "accession": "GCA_013978595.1", "taxid": 2754726, "species_taxid": 2754726, "relation_to_type": "type", "validated": true, "ani": 77.9292, "matched_fragments": 88, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium canis", "strain": "strain=CCUG 58627", "accession": "GCA_007859215.1", "taxid": 679663, "species_taxid": 679663, "relation_to_type": "type", "validated": true, "ani": 77.7633, "matched_fragments": 146, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium silvaticum", "strain": "strain=KL0182", "accession": "GCA_004382825.2", "taxid": 2320431, "species_taxid": 2320431, "relation_to_type": "type", "validated": true, "ani": 77.6827, "matched_fragments": 73, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium timonense", "strain": "strain=DSM 45434", "accession": "GCA_900105305.1", "taxid": 441500, "species_taxid": 441500, "relation_to_type": "type", "validated": true, "ani": 77.4953, "matched_fragments": 82, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium humireducens", "strain": "strain=NBRC 106098", "accession": "GCA_001571025.1", "taxid": 1223514, "species_taxid": 1223514, "relation_to_type": "type", "validated": true, "ani": 77.3837, "matched_fragments": 108, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium ciconiae", "strain": "strain=DSM 44920", "accession": "GCA_000372385.1", "taxid": 227319, "species_taxid": 227319, "relation_to_type": "type", "validated": true, "ani": 77.3544, "matched_fragments": 118, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium mycetoides", "strain": "strain=DSM 20632", "accession": "GCA_900103625.1", "taxid": 38302, "species_taxid": 38302, "relation_to_type": "type", "validated": true, "ani": 77.3513, "matched_fragments": 94, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium halotolerans", "strain": "strain=DSM 44683", "accession": "GCA_000688435.1", "taxid": 225326, "species_taxid": 225326, "relation_to_type": "type", "validated": true, "ani": 77.3241, "matched_fragments": 110, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium timonense", "strain": "strain=5401744", "accession": "GCA_000312345.1", "taxid": 441500, "species_taxid": 441500, "relation_to_type": "type", "validated": true, "ani": 77.1744, "matched_fragments": 79, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium tapiri", "strain": "strain=LMG 28165", "accession": "GCA_006334925.1", "taxid": 1448266, "species_taxid": 1448266, "relation_to_type": "type", "validated": true, "ani": 77.1133, "matched_fragments": 84, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium ihumii", "strain": "strain=GD7", "accession": "GCA_000403725.2", "taxid": 1232427, "species_taxid": 1232427, "relation_to_type": "type", "validated": true, "ani": 77.0966, "matched_fragments": 77, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium wankanglinii", "strain": "strain=zg-913", "accession": "GCA_013601005.1", "taxid": 2735136, "species_taxid": 2735136, "relation_to_type": "type", "validated": true, "ani": 76.903, "matched_fragments": 75, "total_fragments": 928, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_013410305.1", "gtdb_species": "s__Corynebacterium durum", "ani": 99.9992, "matched_fragments": 928, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.07", "min_intra_species_ani": "97.26", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.94", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_000590555.1", "gtdb_species": "s__Corynebacterium argentoratense", "ani": 78.7989, "matched_fragments": 113, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "98.97", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001941445.1", "gtdb_species": "s__Corynebacterium aquilae", "ani": 78.6881, "matched_fragments": 141, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000550805.1", "gtdb_species": "s__Corynebacterium vitaeruminis", "ani": 78.4646, "matched_fragments": 138, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.60", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_009734385.1", "gtdb_species": "s__Corynebacterium sp009734385", "ani": 78.4021, "matched_fragments": 107, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013978595.1", "gtdb_species": "s__Corynebacterium haemomassiliense", "ani": 78.3557, "matched_fragments": 90, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009734425.1", "gtdb_species": "s__Corynebacterium sp009734425", "ani": 78.2789, "matched_fragments": 119, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000011325.1", "gtdb_species": "s__Corynebacterium glutamicum", "ani": 78.1651, "matched_fragments": 88, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.67", "min_intra_species_ani": "97.34", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 76, "status": "-" }, { "accession": "GCF_000341345.1", "gtdb_species": "s__Corynebacterium halotolerans", "ani": 78.1107, "matched_fragments": 118, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019209935.1", "gtdb_species": "s__Corynebacterium sp019209935", "ani": 78.0785, "matched_fragments": 103, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.84", "min_intra_species_ani": "95.84", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_014490595.1", "gtdb_species": "s__Corynebacterium sp014490595", "ani": 77.9687, "matched_fragments": 68, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.54", "min_intra_species_ani": "97.13", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900105305.1", "gtdb_species": "s__Corynebacterium timonense", "ani": 77.852, "matched_fragments": 83, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.93", "min_intra_species_ani": "99.93", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016595275.1", "gtdb_species": "s__Corynebacterium sp016595275", "ani": 77.7783, "matched_fragments": 125, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007859215.1", "gtdb_species": "s__Corynebacterium canis", "ani": 77.7633, "matched_fragments": 146, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004382825.2", "gtdb_species": "s__Corynebacterium silvaticum", "ani": 77.6827, "matched_fragments": 73, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.94", "min_intra_species_ani": "99.78", "mean_intra_species_af": "1.00", "min_intra_species_af": "0.99", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_900113445.1", "gtdb_species": "s__Corynebacterium spheniscorum", "ani": 77.5469, "matched_fragments": 95, "total_fragments": 928, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { 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