{ "type": "genome", "identifier": "GCF_030408735.1", "organism": "Corynebacterium faecale", "title": "Corynebacterium faecale", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bielefeld University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030408735.1", "bioproject": "PRJNA224116", "biosample": "SAMN13404520", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1758466", "species_taxid": "1758466", "organism_name": "Corynebacterium faecale", "infraspecific_name": "strain=DSM 45971", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/07/05", "asm_name": "ASM3040873v1", "asm_submitter": "Bielefeld University", "gbrs_paired_asm": "GCA_030408735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/408/735/GCF_030408735.1_ASM3040873v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3147058", "genome_size_ungapped": "3147058", "gc_percent": "60.000000", "replicon_count": "5", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030408735.1-RS_2024_07_07", "annotation_date": "2024-07-07", "total_gene_count": "2860", "protein_coding_gene_count": "2734", "non_coding_gene_count": "73", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-07-05", "dateModified": "2023-07-05", "datePublished": "2023-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium faecale" ], "sample_taxid": [ "1758466" ], "sample_host_organism": [ "Assamese macaque" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Yunnan Wild Animal Park, Yunnan" ], "sample_host_location_id": [], "data_size": "0.884 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3147058", "Number of Sequences": "5", "Longest Sequences (bp)": "2987260", "N50 (bp)": "2987260", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.9", "Number of CDSs": "2864", "Average Protein Length": "320.9", "Coding Ratio (%)": "87.6", "Number of rRNAs": "15", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium gallinarum", "strain": "strain=Sa1YVA5", "accession": "GCA_014837045.1", "taxid": 2762214, "species_taxid": 2762214, "relation_to_type": "type", "validated": true, "ani": 83.5778, "matched_fragments": 748, 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