{ "type": "genome", "identifier": "GCF_030408755.1", "organism": "Corynebacterium felinum", "title": "Corynebacterium felinum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Bielefeld University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030408755.1", "bioproject": "PRJNA224116", "biosample": "SAMN08964566", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "131318", "species_taxid": "131318", "organism_name": "Corynebacterium felinum", "infraspecific_name": "strain=DSM 44508", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/07/05", "asm_name": "ASM3040875v1", "asm_submitter": "Bielefeld University", "gbrs_paired_asm": "GCA_030408755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/408/755/GCF_030408755.1_ASM3040875v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3236025", "genome_size_ungapped": "3236025", "gc_percent": "54.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030408755.1-RS_2024_07_07", "annotation_date": "2024-07-07", "total_gene_count": "2732", "protein_coding_gene_count": "2631", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-07-05", "dateModified": "2023-07-05", "datePublished": "2023-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium felinum" ], "sample_taxid": [ "131318" ], "sample_host_organism": [ "Felis silvestris" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.916 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3236025", "Number of Sequences": "1", "Longest Sequences (bp)": "3236025", "N50 (bp)": "3236025", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.9", "Number of CDSs": "2690", "Average Protein Length": "324.0", "Coding Ratio (%)": "80.8", "Number of rRNAs": "18", "Number of tRNAs": "57", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium mustelae", "strain": "strain=DSM 45274", "accession": "GCA_001020985.1", "taxid": 571915, "species_taxid": 571915, "relation_to_type": "type", "validated": true, "ani": 79.3372, "matched_fragments": 147, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium epidermidicanis", "strain": "strain=DSM 45586", "accession": "GCA_001021025.1", "taxid": 1050174, "species_taxid": 1050174, "relation_to_type": "type", "validated": true, "ani": 79.2221, "matched_fragments": 92, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium diphtheriae", "strain": "", "accession": "GCA_902809765.1", "taxid": 1717, "species_taxid": 1717, "relation_to_type": "type", "validated": true, "ani": 79.181, "matched_fragments": 126, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium diphtheriae", "strain": "strain=NCTC11397", "accession": "GCA_001457455.1", "taxid": 1717, "species_taxid": 1717, "relation_to_type": "type", "validated": true, "ani": 79.1497, "matched_fragments": 125, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium striatum", "strain": "strain=FDAARGOS_1054", "accession": "GCA_016403285.1", "taxid": 43770, "species_taxid": 43770, "relation_to_type": "type", "validated": true, "ani": 79.0091, "matched_fragments": 101, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium halotolerans", "strain": "strain=YIM 70093 = DSM 44683", "accession": "GCA_000341345.1", "taxid": 225326, "species_taxid": 225326, "relation_to_type": "type", "validated": true, "ani": 78.8941, "matched_fragments": 112, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032 substr. 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1718, "species_taxid": 1718, "relation_to_type": "type", "validated": true, "ani": 78.7463, "matched_fragments": 129, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium striatum", "strain": "strain=NCTC764", "accession": "GCA_900447675.1", "taxid": 43770, "species_taxid": 43770, "relation_to_type": "type", "validated": true, "ani": 78.6628, "matched_fragments": 98, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium gerontici", "strain": "strain=W8", "accession": "GCA_003813985.1", "taxid": 2079234, "species_taxid": 2079234, "relation_to_type": "type", "validated": true, "ani": 78.626, "matched_fragments": 115, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium vitaeruminis", "strain": "strain=DSM 20294", "accession": "GCA_000550805.1", "taxid": 38305, "species_taxid": 38305, "relation_to_type": "type", 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"matched_fragments": 88, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium striatum", "strain": "strain=NBRC 15291", "accession": "GCA_006538485.1", "taxid": 43770, "species_taxid": 43770, "relation_to_type": "type", "validated": true, "ani": 78.393, "matched_fragments": 98, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032", "accession": "GCA_011761195.1", "taxid": 1718, "species_taxid": 1718, "relation_to_type": "type", "validated": true, "ani": 78.392, "matched_fragments": 137, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium silvaticum", "strain": "strain=KL0182", "accession": "GCA_004382825.2", "taxid": 2320431, "species_taxid": 2320431, "relation_to_type": "type", "validated": true, "ani": 78.1339, "matched_fragments": 99, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium frankenforstense", "strain": "strain=ST18", "accession": "GCA_001941485.1", "taxid": 1230998, "species_taxid": 1230998, "relation_to_type": "type", "validated": true, "ani": 77.7543, "matched_fragments": 91, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium halotolerans", "strain": "strain=DSM 44683", "accession": "GCA_000688435.1", "taxid": 225326, "species_taxid": 225326, "relation_to_type": "type", "validated": true, "ani": 77.6916, "matched_fragments": 104, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium spheniscorum", "strain": "strain=CCUG 45512", "accession": "GCA_008693095.1", "taxid": 185761, "species_taxid": 185761, "relation_to_type": "type", "validated": true, "ani": 77.5993, "matched_fragments": 92, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium pollutisoli", "strain": "strain=VDS11", "accession": "GCA_900177745.1", "taxid": 1610489, "species_taxid": 1610489, "relation_to_type": "type", "validated": true, "ani": 77.5979, "matched_fragments": 111, "total_fragments": 1078, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.54, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001021025.1", "gtdb_species": "s__Corynebacterium epidermidicanis", "ani": 79.6008, "matched_fragments": 92, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001457455.1", "gtdb_species": 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115, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000550805.1", "gtdb_species": "s__Corynebacterium vitaeruminis", "ani": 78.7166, "matched_fragments": 164, "total_fragments": 1078, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Corynebacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.86", "min_intra_species_ani": "98.60", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_000341345.1", "gtdb_species": "s__Corynebacterium halotolerans", "ani": 78.6597, "matched_fragments": 110, 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