{ "type": "genome", "identifier": "GCF_030409235.1", "organism": "Halomonas almeriensis", "title": "Halomonas almeriensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Institute of Microbiology of the Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030409235.1", "bioproject": "PRJNA224116", "biosample": "SAMN35653729", "wgs_master": "JAUFPO000000000.1", "refseq_category": "reference genome", "taxid": "308163", "species_taxid": "308163", "organism_name": "Halomonas almeriensis", "infraspecific_name": "strain=CECT 7050", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/07/05", "asm_name": "ASM3040923v1", "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_030409235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/409/235/GCF_030409235.1_ASM3040923v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2815138", "genome_size_ungapped": "2815022", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030409235.1-RS_2024_07_07", "annotation_date": "2024-07-07", "total_gene_count": "2607", "protein_coding_gene_count": "2505", "non_coding_gene_count": "65", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-07-05", "dateModified": "2023-07-05", "datePublished": "2023-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Halomonas almeriensis" ], "sample_taxid": [ "308163" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "0.784 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2815138", "Number of Sequences": "22", "Longest Sequences (bp)": "665742", "N50 (bp)": "310174", "Gap Ratio (%)": "0.004121", "GCcontent (%)": "63.5", "Number of CDSs": "2551", "Average Protein Length": "327.6", "Coding Ratio (%)": "89.0", "Number of rRNAs": "1", "Number of tRNAs": "58", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas halmophila", "strain": "strain=NBRC 15537", "accession": "GCA_006540005.1", "taxid": 252, "species_taxid": 252, "relation_to_type": "type", "validated": true, "ani": 88.7168, "matched_fragments": 761, "total_fragments": 927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas elongata", "strain": "strain=type strain: DSM 2581", "accession": "GCA_000196875.2", "taxid": 2746, "species_taxid": 2746, "relation_to_type": "type", "validated": true, "ani": 82.2747, "matched_fragments": 664, "total_fragments": 927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas caseinilytica", "strain": "strain=JCM 14802", "accession": "GCA_001662305.1", "taxid": 438744, "species_taxid": 438744, "relation_to_type": "type", "validated": true, "ani": 81.8689, "matched_fragments": 659, "total_fragments": 927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas caseinilytica", "strain": "strain=CGMCC 1.6773", "accession": "GCA_900109905.1", "taxid": 438744, "species_taxid": 438744, "relation_to_type": "type", "validated": true, "ani": 81.838, "matched_fragments": 649, "total_fragments": 927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas stenophila", "strain": "strain=CECT 7744", "accession": "GCA_014192275.1", "taxid": 795312, "species_taxid": 795312, "relation_to_type": "type", "validated": true, "ani": 81.2338, "matched_fragments": 606, "total_fragments": 927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas organivorans", "strain": "strain=CECT 5995", "accession": "GCA_014192055.1", "taxid": 257772, "species_taxid": 257772, "relation_to_type": "type", "validated": true, "ani": 81.2334, "matched_fragments": 600, "total_fragments": 927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas nitroreducens", "strain": "strain=11S", "accession": "GCA_003966155.1", "taxid": 447425, "species_taxid": 447425, "relation_to_type": "type", "validated": true, "ani": 81.2024, "matched_fragments": 640, "total_fragments": 927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas smyrnensis", "strain": "strain=AAD6", "accession": "GCA_000265245.2", "taxid": 720605, "species_taxid": 720605, "relation_to_type": "type", "validated": true, "ani": 81.1999, "matched_fragments": 618, "total_fragments": 927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas borealis", "strain": "strain=ATF 5.2", "accession": "GCA_004798905.1", "taxid": 2508710, "species_taxid": 2508710, "relation_to_type": "type", "validated": true, "ani": 80.9015, "matched_fragments": 559, "total_fragments": 927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ventosae", "strain": "strain=CECT 5797", "accession": "GCA_004363555.1", "taxid": 229007, "species_taxid": 229007, "relation_to_type": "type", "validated": true, "ani": 80.6605, "matched_fragments": 579, "total_fragments": 927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 80.3644, "matched_fragments": 527, "total_fragments": 927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=9-2", "accession": "GCA_003202165.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 80.2147, "matched_fragments": 551, "total_fragments": 927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=DSM 26881", "accession": "GCA_002879645.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 80.1376, "matched_fragments": 548, "total_fragments": 927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 80.0351, "matched_fragments": 509, "total_fragments": 927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lysinitropha", "strain": "strain=3(2)", "accession": "GCA_902500215.1", "taxid": 2607506, "species_taxid": 2607506, "relation_to_type": "type", "validated": true, "ani": 80.0005, "matched_fragments": 532, "total_fragments": 927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 79.8405, "matched_fragments": 505, "total_fragments": 927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidivorans", "strain": "strain=MCCC 1A13718", "accession": "GCA_017868935.1", "taxid": 2733488, 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000196875.2", "gtdb_species": "s__Halomonas elongata", "ani": 82.2747, "matched_fragments": 664, "total_fragments": 927, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "98.56", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_001662305.1", "gtdb_species": "s__Halomonas caseinilytica", "ani": 81.881, "matched_fragments": 658, "total_fragments": 927, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.18", "min_intra_species_ani": "98.28", "mean_intra_species_af": "0.94", 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{ "accession": "GCF_000265245.1", "gtdb_species": "s__Halomonas smyrnensis", "ani": 81.1966, "matched_fragments": 618, "total_fragments": 927, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.45", "min_intra_species_ani": "98.45", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002549795.1", "gtdb_species": "s__Halomonas beimenensis", "ani": 81.138, "matched_fragments": 620, "total_fragments": 927, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009363755.1", 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80.6615, "matched_fragments": 578, "total_fragments": 927, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.59", "min_intra_species_ani": "95.59", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900104135.1", "gtdb_species": "s__Halomonas shengliensis", "ani": 80.3481, "matched_fragments": 528, "total_fragments": 927, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.66", "min_intra_species_ani": "95.66", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.79", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002879645.1", "gtdb_species": "s__Halomonas heilongjiangensis", "ani": 80.1323, "matched_fragments": 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"coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Halomonas", "almeriensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }