{ "type": "genome", "identifier": "GCF_030409265.1", "organism": "Halomonas sabkhae", "title": "Halomonas sabkhae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Institute of Microbiology of the Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030409265.1", "bioproject": "PRJNA224116", "biosample": "SAMN35653731", "wgs_master": "JAUFPM000000000.1", "refseq_category": "reference genome", "taxid": "626223", "species_taxid": "626223", "organism_name": "Halomonas sabkhae", "infraspecific_name": "strain=CECT 7246", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/07/05", "asm_name": "ASM3040926v1", "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_030409265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/409/265/GCF_030409265.1_ASM3040926v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3464089", "genome_size_ungapped": "3463861", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030409265.1-RS_2024_07_07", "annotation_date": "2024-07-07", "total_gene_count": "3160", "protein_coding_gene_count": "3078", "non_coding_gene_count": "64", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-07-05", "dateModified": "2023-07-05", "datePublished": "2023-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Halomonas sabkhae" ], "sample_taxid": [ "626223" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Algeria" ], "sample_host_location_id": [], "data_size": "0.960 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3464089", "Number of Sequences": "29", "Longest Sequences (bp)": "493971", "N50 (bp)": "292929", "Gap Ratio (%)": "0.006582", "GCcontent (%)": "63.9", "Number of CDSs": "3094", "Average Protein Length": "331.9", "Coding Ratio (%)": "88.9", "Number of rRNAs": "0", "Number of tRNAs": "60", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas halmophila", "strain": "strain=NBRC 15537", "accession": "GCA_006540005.1", "taxid": 252, "species_taxid": 252, "relation_to_type": "type", "validated": true, "ani": 95.6087, "matched_fragments": 946, "total_fragments": 1140, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halomonas elongata", "strain": "strain=type strain: DSM 2581", "accession": "GCA_000196875.2", "taxid": 2746, "species_taxid": 2746, "relation_to_type": "type", "validated": true, "ani": 83.5284, "matched_fragments": 813, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas caseinilytica", "strain": "strain=CGMCC 1.6773", "accession": "GCA_900109905.1", "taxid": 438744, "species_taxid": 438744, "relation_to_type": "type", "validated": true, "ani": 83.0725, "matched_fragments": 758, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas caseinilytica", "strain": "strain=JCM 14802", "accession": "GCA_001662305.1", "taxid": 438744, "species_taxid": 438744, "relation_to_type": "type", "validated": true, "ani": 82.9744, "matched_fragments": 765, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas smyrnensis", "strain": "strain=AAD6", "accession": "GCA_000265245.2", "taxid": 720605, "species_taxid": 720605, "relation_to_type": "type", "validated": true, "ani": 82.2979, "matched_fragments": 656, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas stenophila", "strain": "strain=CECT 7744", "accession": "GCA_014192275.1", "taxid": 795312, "species_taxid": 795312, "relation_to_type": "type", "validated": true, "ani": 82.0746, "matched_fragments": 703, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas halophila", "strain": "strain=NBRC 102604", "accession": "GCA_007989465.1", "taxid": 29573, "species_taxid": 29573, "relation_to_type": "type", "validated": true, "ani": 82.0449, "matched_fragments": 707, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas nitroreducens", "strain": "strain=11S", "accession": "GCA_003966155.1", "taxid": 447425, "species_taxid": 447425, "relation_to_type": "type", "validated": true, "ani": 81.8296, "matched_fragments": 709, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas organivorans", "strain": "strain=CECT 5995", "accession": "GCA_014192055.1", "taxid": 257772, "species_taxid": 257772, "relation_to_type": "type", "validated": true, "ani": 81.6958, "matched_fragments": 734, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 81.4861, "matched_fragments": 647, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ventosae", "strain": "strain=CECT 5797", "accession": "GCA_004363555.1", "taxid": 229007, "species_taxid": 229007, "relation_to_type": "type", "validated": true, "ani": 81.2603, "matched_fragments": 629, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 80.9992, "matched_fragments": 574, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 80.498, "matched_fragments": 578, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lysinitropha", "strain": "strain=3(2)", "accession": "GCA_902500215.1", "taxid": 2607506, "species_taxid": 2607506, "relation_to_type": "type", "validated": true, "ani": 80.48, "matched_fragments": 579, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 80.2704, "matched_fragments": 582, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aerodenitrificans", "strain": "strain=MCCC 1A11058", "accession": "GCA_021404405.1", "taxid": 2733483, "species_taxid": 2733483, "relation_to_type": "type", "validated": true, "ani": 79.862, "matched_fragments": 544, "total_fragments": 1140, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", "accession": "GCA_009834345.1", "taxid": 2497861, 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