{ "type": "genome", "identifier": "GCF_030409325.1", "organism": "Mucilaginibacter aquaedulcis", "title": "Mucilaginibacter aquaedulcis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Institute of Microbiology of the Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030409325.1", "bioproject": "PRJNA224116", "biosample": "SAMN35653726", "wgs_master": "JAUFPR000000000.1", "refseq_category": "reference genome", "taxid": "1187081", "species_taxid": "1187081", "organism_name": "Mucilaginibacter aquaedulcis", "infraspecific_name": "strain=CECT 8102", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/07/05", "asm_name": "ASM3040932v1", "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_030409325.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/409/325/GCF_030409325.1_ASM3040932v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6129368", "genome_size_ungapped": "6129368", "gc_percent": "41.500000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030409325.1-RS_2024_07_07", "annotation_date": "2024-07-07", "total_gene_count": "5209", "protein_coding_gene_count": "5141", "non_coding_gene_count": "52", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-07-05", "dateModified": "2023-07-05", "datePublished": "2023-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Mucilaginibacter aquaedulcis" ], "sample_taxid": [ "1187081" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.733 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6129368", "Number of Sequences": "8", "Longest Sequences (bp)": "2580745", "N50 (bp)": "1214226", "Gap Ratio (%)": "0.000016", "GCcontent (%)": "41.5", "Number of CDSs": "5116", "Average Protein Length": "345.9", "Coding Ratio (%)": "86.6", "Number of rRNAs": "3", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mucilaginibacter lappiensis", "strain": "strain=ANJLi2", "accession": "GCA_014200545.1", "taxid": 354630, "species_taxid": 354630, "relation_to_type": "type", "validated": true, "ani": 80.6438, "matched_fragments": 933, "total_fragments": 2040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter lappiensis", "strain": "strain=ATCC BAA-1855", "accession": "GCA_900155965.1", "taxid": 354630, "species_taxid": 354630, "relation_to_type": "type", "validated": true, "ani": 80.638, "matched_fragments": 934, "total_fragments": 2040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter inviolabilis", "strain": "strain=HC2", "accession": "GCA_011089895.1", "taxid": 2714892, "species_taxid": 2714892, "relation_to_type": "type", "validated": true, "ani": 80.6096, "matched_fragments": 930, "total_fragments": 2040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pineti", "strain": "strain=47C3B", "accession": "GCA_900101875.1", "taxid": 1391627, "species_taxid": 1391627, "relation_to_type": "type", "validated": true, "ani": 79.5916, "matched_fragments": 758, "total_fragments": 2040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter ginsenosidivorax", "strain": "strain=KHI28", "accession": "GCA_007971525.1", "taxid": 862126, "species_taxid": 862126, "relation_to_type": "type", "validated": true, "ani": 78.9964, "matched_fragments": 714, "total_fragments": 2040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter kameinonensis", "strain": "strain=SCK", "accession": "GCA_003675385.1", "taxid": 452286, "species_taxid": 452286, "relation_to_type": "type", "validated": true, "ani": 78.8503, "matched_fragments": 695, "total_fragments": 2040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypiicola", "strain": "strain=Gh-48", "accession": "GCA_900110105.1", "taxid": 551995, "species_taxid": 551995, "relation_to_type": "type", "validated": true, "ani": 78.7695, "matched_fragments": 697, "total_fragments": 2040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gossypii", "strain": "strain=Gh-67", "accession": "GCA_900100945.1", "taxid": 551996, "species_taxid": 551996, "relation_to_type": "type", "validated": true, "ani": 78.7048, "matched_fragments": 683, "total_fragments": 2040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter celer", "strain": "strain=HYN0043", "accession": "GCA_003576455.2", "taxid": 2305508, "species_taxid": 2305508, "relation_to_type": "type", "validated": true, "ani": 78.5774, "matched_fragments": 681, "total_fragments": 2040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter mallensis", "strain": "strain=MP1X4", "accession": "GCA_900105165.1", "taxid": 652787, "species_taxid": 652787, "relation_to_type": "type", "validated": true, "ani": 78.1357, "matched_fragments": 402, "total_fragments": 2040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter pallidiroseus", "strain": "strain=dk17", "accession": "GCA_007846085.1", "taxid": 2599295, "species_taxid": 2599295, "relation_to_type": "type", "validated": true, "ani": 78.0038, "matched_fragments": 316, "total_fragments": 2040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter achroorhodeus", "strain": "strain=MJ1a", "accession": "GCA_007846095.1", "taxid": 2599294, "species_taxid": 2599294, "relation_to_type": "type", "validated": true, "ani": 77.8589, "matched_fragments": 261, "total_fragments": 2040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter gilvus", "strain": "strain=F01003", "accession": "GCA_004054195.1", "taxid": 2305909, "species_taxid": 2305909, "relation_to_type": "type", "validated": true, "ani": 77.8082, "matched_fragments": 349, "total_fragments": 2040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter conchicola", "strain": "strain=MYSH2", "accession": "GCA_003432115.1", "taxid": 2303333, "species_taxid": 2303333, "relation_to_type": "type", "validated": true, "ani": 77.6643, "matched_fragments": 376, "total_fragments": 2040, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mucilaginibacter roseus", "strain": "strain=LMG 28454", "accession": "GCA_021215455.1", "taxid": 1528868, "species_taxid": 1528868, "relation_to_type": "type", "validated": true, "ani": 77.6227, "matched_fragments": 287, "total_fragments": 2040, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014200575.1", "gtdb_species": "s__Mucilaginibacter sp014200575", "ani": 80.93, "matched_fragments": 949, "total_fragments": 2040, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900103125.1", "gtdb_species": "s__Mucilaginibacter sp900103125", "ani": 80.7488, "matched_fragments": 986, "total_fragments": 2040, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900155965.1", "gtdb_species": "s__Mucilaginibacter lappiensis", "ani": 80.6386, "matched_fragments": 933, "total_fragments": 2040, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "98.24", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_011089895.1", "gtdb_species": "s__Mucilaginibacter inviolabilis", "ani": 80.606, "matched_fragments": 932, "total_fragments": 2040, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013149275.1", "gtdb_species": "s__Mucilaginibacter sp013149275", "ani": 80.5802, "matched_fragments": 940, "total_fragments": 2040, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900101875.1", "gtdb_species": "s__Mucilaginibacter pineti", "ani": 79.5591, "matched_fragments": 763, "total_fragments": 2040, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014205845.1", "gtdb_species": "s__Mucilaginibacter sp014205845", "ani": 79.2633, "matched_fragments": 741, "total_fragments": 2040, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900110415.1", "gtdb_species": "s__Mucilaginibacter sp900110415", "ani": 79.1159, "matched_fragments": 696, "total_fragments": 2040, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007971525.1", "gtdb_species": "s__Mucilaginibacter ginsenosidivorax", "ani": 78.9897, "matched_fragments": 715, "total_fragments": 2040, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003664165.1", "gtdb_species": "s__Mucilaginibacter sp003664165", "ani": 78.7163, "matched_fragments": 713, "total_fragments": 2040, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003208075.1", "gtdb_species": "s__Mucilaginibacter sp003208075", "ani": 78.66, "matched_fragments": 707, "total_fragments": 2040, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900105165.1", "gtdb_species": "s__Mucilaginibacter mallensis", "ani": 78.1214, "matched_fragments": 403, "total_fragments": 2040, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Mucilaginibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.382, "cell_length": 0.217, "doubling_h": null, "growth_tmp": 25.111, "optimum_tmp": 26.0, "optimum_ph": 6.449, "genome_size": 6405217.25, "gc_content": 43.045, "coding_genes": 5407.0, "rRNA16S_genes": 2.0, "tRNA_genes": 47.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.269, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.73, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Mucilaginibacter", "aquaedulcis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }