{ "type": "genome", "identifier": "GCF_030409475.1", "organism": "Methylobacterium isbiliense", "title": "Methylobacterium isbiliense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Institute of Microbiology of the Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030409475.1", "bioproject": "PRJNA224116", "biosample": "SAMN35653719", "wgs_master": "JAUFPY000000000.1", "refseq_category": "na", "taxid": "315478", "species_taxid": "315478", "organism_name": "Methylobacterium isbiliense", "infraspecific_name": "strain=CECT 7068", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/07/05", "asm_name": "ASM3040947v1", "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_030409475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/409/475/GCF_030409475.1_ASM3040947v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7049840", "genome_size_ungapped": "7049840", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "220", "contig_count": "220", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030409475.1-RS_2024_07_07", "annotation_date": "2024-07-07", "total_gene_count": "6908", "protein_coding_gene_count": "6610", "non_coding_gene_count": "55", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-07-05", "dateModified": "2023-07-05", "datePublished": "2023-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium isbiliense" ], "sample_taxid": [ "315478" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "1.904 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7049840", "Number of Sequences": "220", "Longest Sequences (bp)": "419062", "N50 (bp)": "103055", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "71.1", "Number of CDSs": "6809", "Average Protein Length": "293.6", "Coding Ratio (%)": "85.1", "Number of rRNAs": "2", "Number of tRNAs": "63", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacterium isbiliense", "strain": "strain=DSM 17168", "accession": "GCA_022179325.1", "taxid": 315478, "species_taxid": 315478, "relation_to_type": "type", "validated": true, "ani": 99.9624, "matched_fragments": 2175, "total_fragments": 2254, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methylobacterium nodulans", "strain": "strain=ORS 2060", "accession": "GCA_000022085.1", "taxid": 114616, "species_taxid": 114616, "relation_to_type": "type", "validated": true, "ani": 84.6098, "matched_fragments": 1351, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nonmethylotrophicum", "strain": "strain=6HR-1", "accession": "GCA_004745635.1", "taxid": 1141884, "species_taxid": 1141884, "relation_to_type": "type", "validated": true, "ani": 84.057, "matched_fragments": 1388, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=MIMD6", "accession": "GCA_003574465.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 83.96, "matched_fragments": 1255, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 83.9299, "matched_fragments": 1340, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terrae", "strain": "strain=17Sr1-28", "accession": "GCA_003173755.1", "taxid": 2202827, "species_taxid": 2202827, "relation_to_type": "type", "validated": true, "ani": 83.8066, "matched_fragments": 1260, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 83.7384, "matched_fragments": 1241, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium platani", "strain": "strain=JCM 14648", "accession": "GCA_001043885.1", "taxid": 427683, "species_taxid": 427683, "relation_to_type": "type", "validated": true, "ani": 83.615, "matched_fragments": 1165, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium platani", "strain": "strain=PMB02", "accession": "GCA_001653715.1", "taxid": 427683, "species_taxid": 427683, "relation_to_type": "type", "validated": true, "ani": 83.5423, "matched_fragments": 1269, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium indicum", "strain": "strain=SE2.11", "accession": "GCA_001043895.1", "taxid": 1775910, "species_taxid": 1775910, "relation_to_type": "type", "validated": true, "ani": 83.4978, "matched_fragments": 1163, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium currus", "strain": "strain=PR1016A", "accession": "GCA_003058325.1", "taxid": 2051553, "species_taxid": 2051553, "relation_to_type": "type", "validated": true, "ani": 83.4643, "matched_fragments": 1342, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium frigidaeris", "strain": "strain=JCM 32048", "accession": "GCA_022179185.1", "taxid": 2038277, "species_taxid": 2038277, "relation_to_type": "type", "validated": true, "ani": 83.4576, "matched_fragments": 1324, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tarhaniae", "strain": "strain=DSM 25844", "accession": "GCA_001043955.1", "taxid": 1187852, "species_taxid": 1187852, "relation_to_type": "type", "validated": true, "ani": 83.434, "matched_fragments": 1188, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium frigidaeris", "strain": "strain=IER25-16", "accession": "GCA_002759055.1", "taxid": 2038277, "species_taxid": 2038277, "relation_to_type": "type", "validated": true, "ani": 83.2784, "matched_fragments": 850, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 83.2347, "matched_fragments": 1286, "total_fragments": 2254, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000019365.1", "gtdb_species": "s__Methylobacterium sp000019365", "ani": 84.6594, "matched_fragments": 1428, "total_fragments": 2254, "gtdb_taxonomy": 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