{ "type": "genome", "identifier": "GCF_030409725.1", "organism": "Thalassotalea ponticola", "title": "Thalassotalea ponticola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Institute of Microbiology of the Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030409725.1", "bioproject": "PRJNA224116", "biosample": "SAMN35653692", "wgs_master": "JAUFQL000000000.1", "refseq_category": "na", "taxid": "1523392", "species_taxid": "1523392", "organism_name": "Thalassotalea ponticola", "infraspecific_name": "strain=CECT 8656", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/07/05", "asm_name": "ASM3040972v1", "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_030409725.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/409/725/GCF_030409725.1_ASM3040972v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3303221", "genome_size_ungapped": "3303064", "gc_percent": "44.500000", "replicon_count": "0", "scaffold_count": "54", "contig_count": "54", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030409725.1-RS_2024_07_07", "annotation_date": "2024-07-07", "total_gene_count": "2943", "protein_coding_gene_count": "2810", "non_coding_gene_count": "115", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-07-05", "dateModified": "2023-07-05", "datePublished": "2023-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Thalassotalea ponticola" ], "sample_taxid": [ "1523392" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.942 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3303221", "Number of Sequences": "54", "Longest Sequences (bp)": "630031", "N50 (bp)": "195036", "Gap Ratio (%)": "0.004753", "GCcontent (%)": "44.4", "Number of CDSs": "2821", "Average Protein Length": "331.0", "Coding Ratio (%)": "84.8", "Number of rRNAs": "7", "Number of tRNAs": "91", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thalassotalea mangrovi", "strain": "strain=ZS-4", "accession": "GCA_005116735.1", "taxid": 2572245, "species_taxid": 2572245, "relation_to_type": "type", "validated": true, "ani": 78.7495, "matched_fragments": 118, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassotalea agarivorans", "strain": "strain=DSM 19706", "accession": "GCA_900111755.1", "taxid": 349064, "species_taxid": 349064, "relation_to_type": "type", "validated": true, "ani": 78.567, "matched_fragments": 95, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassotalea marina", "strain": "strain=KCTC 42731", "accession": "GCA_014656435.1", "taxid": 1673741, "species_taxid": 1673741, "relation_to_type": "type", "validated": true, "ani": 78.4173, "matched_fragments": 99, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassotalea crassostreae", "strain": "strain=LPB0090", "accession": "GCA_001652445.1", "taxid": 1763536, "species_taxid": 1763536, "relation_to_type": "type", "validated": true, "ani": 78.4054, "matched_fragments": 142, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassotalea crassostreae", "strain": "strain=LPB0090", "accession": "GCA_001831495.1", "taxid": 1763536, "species_taxid": 1763536, "relation_to_type": "type", "validated": true, "ani": 78.3181, "matched_fragments": 140, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litorilituus lipolyticus", "strain": "strain=RZ04", "accession": "GCA_006439335.1", "taxid": 2491017, "species_taxid": 2491017, "relation_to_type": "type", "validated": true, "ani": 77.8738, "matched_fragments": 85, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cognaticolwellia mytili", "strain": "strain=KCTC 52417", "accession": "GCA_002104475.1", "taxid": 1888913, "species_taxid": 1888913, "relation_to_type": "type", "validated": true, "ani": 77.8643, "matched_fragments": 84, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassomonas actiniarum", "strain": "strain=A5K-106", "accession": "GCA_000948975.1", "taxid": 485447, "species_taxid": 485447, "relation_to_type": "type", "validated": true, "ani": 77.7542, "matched_fragments": 75, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudocolwellia agarivorans", "strain": "strain=QM50", "accession": "GCA_002000085.1", "taxid": 1911682, "species_taxid": 1911682, "relation_to_type": "type", "validated": true, "ani": 77.4898, "matched_fragments": 72, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas arabiensis", "strain": "strain=JCM 17292", "accession": "GCA_001550155.1", "taxid": 874454, "species_taxid": 874454, "relation_to_type": "type", "validated": true, "ani": 77.3866, "matched_fragments": 55, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia hornerae", "strain": "strain=ACAM 607", "accession": "GCA_007954355.1", "taxid": 89402, "species_taxid": 89402, "relation_to_type": "type", "validated": true, "ani": 77.2072, "matched_fragments": 77, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas tetraodonis", "strain": "strain=GFC", "accession": "GCA_002310835.1", "taxid": 43659, "species_taxid": 43659, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8172, "matched_fragments": 56, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas issachenkonii", "strain": "strain=KMM 3549", "accession": "GCA_002310795.1", "taxid": 152297, "species_taxid": 152297, "relation_to_type": "suspected-type", "validated": true, "ani": 76.8165, "matched_fragments": 59, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas issachenkonii", "strain": "strain=KCTC 12958", "accession": "GCA_001455325.1", "taxid": 152297, "species_taxid": 152297, "relation_to_type": "suspected-type", "validated": true, "ani": 76.7744, "matched_fragments": 59, "total_fragments": 1082, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_004752005.1", "gtdb_species": "s__Thalassotalea_A sp004752005", "ani": 79.0912, "matched_fragments": 315, "total_fragments": 1082, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.63", "min_intra_species_ani": "95.63", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_005116735.1", "gtdb_species": "s__Thalassotalea_A mangrovi", "ani": 78.7697, "matched_fragments": 118, "total_fragments": 1082, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007097525.1", "gtdb_species": "s__Thalassotalea_A sp007097525", "ani": 78.5794, "matched_fragments": 127, "total_fragments": 1082, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007197775.1", "gtdb_species": "s__Thalassotalea_A sp007197775", "ani": 78.5785, "matched_fragments": 142, "total_fragments": 1082, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900111755.1", "gtdb_species": "s__Thalassotalea_D agarivorans", "ani": 78.5246, "matched_fragments": 96, "total_fragments": 1082, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_D", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017744155.1", "gtdb_species": "s__Thalassotalea sp017744155", "ani": 78.3634, "matched_fragments": 113, "total_fragments": 1082, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001831495.1", "gtdb_species": "s__Thalassotalea_A crassostreae", "ani": 78.2909, "matched_fragments": 141, "total_fragments": 1082, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003390375.1", "gtdb_species": "s__Thalassotalea euphylliae_A", "ani": 77.9588, "matched_fragments": 119, "total_fragments": 1082, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003390335.1", "gtdb_species": "s__Thalassotalea euphylliae_B", "ani": 77.9422, "matched_fragments": 128, "total_fragments": 1082, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005843925.1", "gtdb_species": "s__Thalassotalea_A litorea", "ani": 77.94, "matched_fragments": 135, "total_fragments": 1082, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002104535.1", "gtdb_species": "s__Cognaticolwellia sediminilitoris", "ani": 77.8928, "matched_fragments": 88, "total_fragments": 1082, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Cognaticolwellia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_006439335.1", "gtdb_species": "s__Litorilituus lipolyticus", "ani": 77.8829, "matched_fragments": 84, "total_fragments": 1082, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Litorilituus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014898095.1", "gtdb_species": "s__Thalassotalea sp014898095", "ani": 77.7569, "matched_fragments": 126, "total_fragments": 1082, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000764205.1", "gtdb_species": "s__Thalassotalea_A sp000764205", "ani": 77.7014, "matched_fragments": 179, "total_fragments": 1082, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Thalassotalea_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003061515.1", "gtdb_species": "s__Cognaticolwellia sp003061515", "ani": 77.3295, "matched_fragments": 88, "total_fragments": 1082, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Cognaticolwellia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.05", "min_intra_species_ani": "98.05", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001306915.1", "gtdb_species": "s__Pseudoalteromonas lipolytica_A", "ani": 77.2821, "matched_fragments": 59, "total_fragments": 1082, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.22", "min_intra_species_ani": "97.66", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_002076895.1", "gtdb_species": "s__Cognaticolwellia beringensis", "ani": 77.2661, "matched_fragments": 92, "total_fragments": 1082, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Cognaticolwellia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002401725.1", "gtdb_species": "s__GCA-2401725 sp002401725", "ani": 76.4224, "matched_fragments": 65, "total_fragments": 1082, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__GCA-2401725", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.296, "cell_length": 0.141, "doubling_h": null, "growth_tmp": 29.5, "optimum_tmp": 27.5, "optimum_ph": 7.25, "genome_size": 3584097.5, "gc_content": 38.8, "coding_genes": 3255.0, "rRNA16S_genes": 6.0, "tRNA_genes": 72.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.666, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Thalassotalea", "ponticola" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }