{ "type": "genome", "identifier": "GCF_030409795.1", "organism": "Flavobacterium paronense", "title": "Flavobacterium paronense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Institute of Microbiology of the Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030409795.1", "bioproject": "PRJNA224116", "biosample": "SAMN35653685", "wgs_master": "JAUFQN000000000.1", "refseq_category": "reference genome", "taxid": "1392775", "species_taxid": "1392775", "organism_name": "Flavobacterium paronense", "infraspecific_name": "strain=CECT 8460", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/07/05", "asm_name": "ASM3040979v1", "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_030409795.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/409/795/GCF_030409795.1_ASM3040979v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3652872", "genome_size_ungapped": "3652872", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "26", "contig_count": "26", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030409795.1-RS_2024_08_06", "annotation_date": "2024-08-06", "total_gene_count": "3068", "protein_coding_gene_count": "2913", "non_coding_gene_count": "61", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-07-05", "dateModified": "2023-07-05", "datePublished": "2023-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium paronense" ], "sample_taxid": [ "1392775" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "0.985 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3652872", "Number of Sequences": "26", "Longest Sequences (bp)": "3200262", "N50 (bp)": "3200262", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.2", "Number of CDSs": "3152", "Average Protein Length": "340.3", "Coding Ratio (%)": "88.1", "Number of rRNAs": "10", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium sangjuense", "strain": "strain=GS03", "accession": "GCA_004797125.1", "taxid": 2518177, "species_taxid": 2518177, "relation_to_type": "type", "validated": true, "ani": 84.4456, "matched_fragments": 726, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium phycosphaerae", "strain": "strain=MK012", "accession": "GCA_010119235.1", "taxid": 2697515, "species_taxid": 2697515, "relation_to_type": "type", "validated": true, "ani": 79.5304, "matched_fragments": 505, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium dankookense", "strain": "strain=DSM 25687", "accession": "GCA_004362665.1", "taxid": 706186, "species_taxid": 706186, "relation_to_type": "type", "validated": true, "ani": 79.2205, "matched_fragments": 441, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium solisilvae", "strain": "strain=SE-s27", "accession": "GCA_012911605.1", "taxid": 1852019, "species_taxid": 1852019, "relation_to_type": "type", "validated": true, "ani": 79.09, "matched_fragments": 433, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=LMG 25203", "accession": "GCA_014385475.2", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 78.9063, "matched_fragments": 434, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=an-8", "accession": "GCA_014486675.1", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 78.8668, "matched_fragments": 438, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium silvisoli", "strain": "strain=RD-2-33", "accession": "GCA_004329815.1", "taxid": 2529433, "species_taxid": 2529433, "relation_to_type": "type", "validated": true, "ani": 78.8054, "matched_fragments": 382, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquatile", "strain": "strain=LMG 4008", "accession": "GCA_000757385.1", "taxid": 245, "species_taxid": 245, "relation_to_type": "type", "validated": true, "ani": 78.6749, "matched_fragments": 393, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquatile", "strain": "strain=ATCC 11947", "accession": "GCA_002217235.1", "taxid": 245, "species_taxid": 245, "relation_to_type": "type", "validated": true, "ani": 78.6585, "matched_fragments": 384, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cheniae", "strain": "strain=DSM 22462", "accession": "GCA_004363695.1", "taxid": 295428, "species_taxid": 295428, "relation_to_type": "type", "validated": true, "ani": 78.0072, "matched_fragments": 249, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cheniae", "strain": "strain=CGMCC 1.6844", "accession": "GCA_007830415.1", "taxid": 295428, "species_taxid": 295428, "relation_to_type": "type", "validated": true, "ani": 77.9462, "matched_fragments": 247, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium channae", "strain": "strain=KSM-R2A30", "accession": "GCA_021172165.1", "taxid": 2897181, "species_taxid": 2897181, "relation_to_type": "type", "validated": true, "ani": 77.9258, "matched_fragments": 273, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychrolimnae", "strain": "strain=LMG 22018", "accession": "GCA_003312425.1", "taxid": 249351, "species_taxid": 249351, "relation_to_type": "type", "validated": true, "ani": 77.8332, "matched_fragments": 257, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cyclinae", "strain": "strain=KSM-R2A25", "accession": "GCA_021172145.1", "taxid": 2895947, "species_taxid": 2895947, "relation_to_type": "type", "validated": true, "ani": 77.7738, "matched_fragments": 240, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium proteolyticum", "strain": "strain=1Y8A", "accession": "GCA_015223105.1", "taxid": 2911683, "species_taxid": 2911683, "relation_to_type": "type", "validated": true, "ani": 77.7601, "matched_fragments": 245, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium jumunjinense", "strain": "strain=HME7102", "accession": "GCA_021650975.2", "taxid": 998845, "species_taxid": 998845, "relation_to_type": "type", "validated": true, "ani": 77.7546, "matched_fragments": 173, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xinjiangense", "strain": "strain=CGMCC 1.2749", "accession": "GCA_900142885.1", "taxid": 178356, "species_taxid": 178356, "relation_to_type": "type", "validated": true, "ani": 77.7466, "matched_fragments": 253, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium xueshanense", "strain": "strain=CGMCC 1.9227", "accession": "GCA_900112975.1", "taxid": 935223, "species_taxid": 935223, "relation_to_type": "type", "validated": true, "ani": 77.7077, "matched_fragments": 234, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium laiguense", "strain": "strain=LB2P30", "accession": "GCA_003097655.1", "taxid": 2169409, "species_taxid": 2169409, "relation_to_type": "type", "validated": true, "ani": 77.7046, "matched_fragments": 226, "total_fragments": 1204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": 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