{ "type": "genome", "identifier": "GCF_030409835.1", "organism": "Lutimonas halocynthiae", "title": "Lutimonas halocynthiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Institute of Microbiology of the Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030409835.1", "bioproject": "PRJNA224116", "biosample": "SAMN35653684", "wgs_master": "JAUFQO000000000.1", "refseq_category": "reference genome", "taxid": "1446477", "species_taxid": "1446477", "organism_name": "Lutimonas halocynthiae", "infraspecific_name": "strain=CECT 8444", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/07/05", "asm_name": "ASM3040983v1", "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_030409835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/409/835/GCF_030409835.1_ASM3040983v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3991010", "genome_size_ungapped": "3991000", "gc_percent": "35.500000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030409835.1-RS_2024_07_07", "annotation_date": "2024-07-07", "total_gene_count": "3572", "protein_coding_gene_count": "3516", "non_coding_gene_count": "42", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-07-05", "dateModified": "2023-07-05", "datePublished": "2023-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Lutimonas halocynthiae" ], "sample_taxid": [ "1446477" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.123 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3991010", "Number of Sequences": "21", "Longest Sequences (bp)": "1116545", "N50 (bp)": "1045253", "Gap Ratio (%)": "0.000251", "GCcontent (%)": "35.7", "Number of CDSs": "3498", "Average Protein Length": "339.0", "Coding Ratio (%)": "89.1", "Number of rRNAs": "3", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aureibaculum marinum", "strain": "strain=BH-SD17", "accession": "GCA_003813905.1", "taxid": 2487930, "species_taxid": 2487930, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter pacificus", "strain": "strain=CGMCC 1.15763", "accession": "GCA_014643655.1", "taxid": 1775173, "species_taxid": 1775173, "relation_to_type": "type", "validated": true, "ani": 76.5032, "matched_fragments": 54, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum ovolyticum", "strain": "strain=DSM 18103", "accession": "GCA_000430545.1", "taxid": 104270, "species_taxid": 104270, "relation_to_type": "type", "validated": true, "ani": 76.5011, "matched_fragments": 56, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter citreus", "strain": "strain=1KV19", "accession": "GCA_003260195.1", "taxid": 2138210, "species_taxid": 2138210, "relation_to_type": "type", "validated": true, "ani": 76.4276, "matched_fragments": 92, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter profundi", "strain": "strain=LP1", "accession": "GCA_001543325.1", "taxid": 1622118, "species_taxid": 1622118, "relation_to_type": "type", "validated": true, "ani": 76.4096, "matched_fragments": 68, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter oceani", "strain": "strain=JCM30924", "accession": "GCA_003426875.1", "taxid": 1853311, "species_taxid": 1853311, "relation_to_type": "type", "validated": true, "ani": 76.4027, "matched_fragments": 112, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutibacter oceani", "strain": "strain=325-5", "accession": "GCA_003384935.1", "taxid": 1853311, "species_taxid": 1853311, "relation_to_type": "type", "validated": true, "ani": 76.3582, "matched_fragments": 110, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavicella sediminum", "strain": "strain=ALS 84", "accession": "GCA_006381105.1", "taxid": 2585141, "species_taxid": 2585141, "relation_to_type": "type", "validated": true, "ani": 76.3146, "matched_fragments": 65, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter undariae", "strain": "strain=KCTC 42175", "accession": "GCA_024918935.1", "taxid": 1574269, "species_taxid": 1574269, "relation_to_type": "type", "validated": true, "ani": 76.1601, "matched_fragments": 72, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 76.0934, "matched_fragments": 50, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquimarina aggregata", "strain": "strain=RZW4-3-2", "accession": "GCA_001632745.1", "taxid": 1642818, "species_taxid": 1642818, "relation_to_type": "type", "validated": true, "ani": 76.0261, "matched_fragments": 53, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter vadi", "strain": "strain=LPB0003", "accession": "GCA_001680885.1", "taxid": 1774273, "species_taxid": 1774273, "relation_to_type": "type", "validated": true, "ani": 76.0219, "matched_fragments": 59, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum skagerrakense", "strain": "strain=DSM 14836", "accession": "GCA_004345825.1", "taxid": 186571, "species_taxid": 186571, "relation_to_type": "type", "validated": true, "ani": 76.0214, "matched_fragments": 58, "total_fragments": 1323, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum jejuense", "strain": "strain=type strain: KCTC 22618", "accession": "GCA_900198195.1", "taxid": 584609, "species_taxid": 584609, 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