{ "type": "genome", "identifier": "GCF_030409945.1", "organism": "Vibrio tapetis subsp. quintayensis", "title": "Vibrio tapetis subsp. quintayensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Institute of Microbiology of the Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030409945.1", "bioproject": "PRJNA224116", "biosample": "SAMN35653671", "wgs_master": "JAUFQV000000000.1", "refseq_category": "reference genome", "taxid": "1926258", "species_taxid": "52443", "organism_name": "Vibrio tapetis subsp. quintayensis", "infraspecific_name": "strain=CECT 8851", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/07/05", "asm_name": "ASM3040994v1", "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_030409945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/409/945/GCF_030409945.1_ASM3040994v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5198666", "genome_size_ungapped": "5198637", "gc_percent": "44.000000", "replicon_count": "0", "scaffold_count": "55", "contig_count": "55", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030409945.1-RS_2024_07_07", "annotation_date": "2024-07-07", "total_gene_count": "4699", "protein_coding_gene_count": "4534", "non_coding_gene_count": "98", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-07-05", "dateModified": "2023-07-05", "datePublished": "2023-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio tapetis subsp. quintayensis" ], "sample_taxid": [ "1926258" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile" ], "sample_host_location_id": [], "data_size": "1.487 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5198666", "Number of Sequences": "55", "Longest Sequences (bp)": "640874", "N50 (bp)": "358735", "Gap Ratio (%)": "0.000558", "GCcontent (%)": "43.9", "Number of CDSs": "4588", "Average Protein Length": "326.3", "Coding Ratio (%)": "86.4", "Number of rRNAs": "2", "Number of tRNAs": "88", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio splendidus", "strain": "strain=LMG 19031", "accession": "GCA_024347615.1", "taxid": 29497, "species_taxid": 29497, "relation_to_type": "type", "validated": true, "ani": 79.7585, "matched_fragments": 374, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio toranzoniae", "strain": "strain=CECT 7225", "accession": "GCA_900089765.1", "taxid": 1194427, "species_taxid": 1194427, "relation_to_type": "type", "validated": true, "ani": 79.6432, "matched_fragments": 328, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio cortegadensis", "strain": "strain=CECT 7227", "accession": "GCA_024347395.1", "taxid": 1328770, "species_taxid": 1328770, "relation_to_type": "type", "validated": true, "ani": 79.6304, "matched_fragments": 335, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio toranzoniae", "strain": "strain=CECT 7225", "accession": "GCA_024347655.1", "taxid": 1194427, "species_taxid": 1194427, "relation_to_type": "type", "validated": true, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio celticus", "strain": "strain=Rd 8.15", "accession": "GCA_002156525.1", "taxid": 446372, "species_taxid": 446372, "relation_to_type": "type", "validated": true, "ani": 79.5729, "matched_fragments": 356, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gigantis", "strain": "strain=LGP 13", "accession": "GCA_002156475.1", "taxid": 296199, "species_taxid": 296199, "relation_to_type": "type", "validated": true, "ani": 79.5481, "matched_fragments": 351, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio celticus", "strain": "strain=CECT 7224", "accession": "GCA_900089965.1", "taxid": 446372, "species_taxid": 446372, "relation_to_type": "type", "validated": true, "ani": 79.5373, "matched_fragments": 368, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio coralliirubri", "strain": "strain=DSM 27495", "accession": "GCA_024347375.1", "taxid": 1516159, "species_taxid": 1516159, "relation_to_type": "type", "validated": true, "ani": 79.5246, "matched_fragments": 375, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio comitans", "strain": "strain=NBRC 102076", "accession": "GCA_006538565.1", "taxid": 413401, "species_taxid": 413401, "relation_to_type": "type", "validated": true, "ani": 79.4842, "matched_fragments": 197, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio bathopelagicus", "strain": "strain=Sal10", "accession": "GCA_014879975.1", "taxid": 2777577, "species_taxid": 2777577, "relation_to_type": "type", "validated": true, "ani": 79.4791, "matched_fragments": 367, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio pomeroyi", "strain": "strain=LMG 20537", "accession": "GCA_024347595.1", "taxid": 198832, "species_taxid": 198832, "relation_to_type": "type", "validated": true, "ani": 79.4641, "matched_fragments": 375, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio inusitatus", "strain": "strain=LMG 23434", "accession": "GCA_024346935.1", "taxid": 413402, "species_taxid": 413402, "relation_to_type": "type", "validated": true, "ani": 79.4362, "matched_fragments": 201, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_024347355.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 79.3684, "matched_fragments": 342, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio inusitatus", "strain": "strain=NBRC 102082", "accession": "GCA_006538525.1", "taxid": 413402, "species_taxid": 413402, "relation_to_type": "type", "validated": true, "ani": 79.329, "matched_fragments": 195, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio penaeicida", "strain": "strain=CAIM 285", "accession": "GCA_003970425.1", "taxid": 104609, "species_taxid": 104609, "relation_to_type": "type", "validated": true, "ani": 79.204, "matched_fragments": 321, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio penaeicida", "strain": "strain=IFO 15640", "accession": "GCA_019977755.1", "taxid": 104609, "species_taxid": 104609, "relation_to_type": "type", "validated": true, "ani": 79.1526, "matched_fragments": 347, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio renipiscarius", "strain": "strain=DCR 1-4-2", "accession": "GCA_000827885.1", "taxid": 1461322, "species_taxid": 1461322, "relation_to_type": "type", "validated": true, "ani": 79.0855, "matched_fragments": 277, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ichthyoenteri", "strain": "strain=ATCC 700023", "accession": "GCA_000222605.2", "taxid": 142461, "species_taxid": 142461, "relation_to_type": "type", "validated": true, "ani": 79.0854, "matched_fragments": 276, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio nigripulchritudo", "strain": "strain=ATCC 27043", "accession": "GCA_000222685.2", "taxid": 28173, "species_taxid": 28173, "relation_to_type": "type", "validated": true, "ani": 79.0363, "matched_fragments": 323, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio sinensis", "strain": "strain=BEI233", "accession": "GCA_003605645.1", "taxid": 2302434, "species_taxid": 2302434, "relation_to_type": "type", "validated": true, "ani": 79.0066, "matched_fragments": 285, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio europaeus", "strain": "strain=PP-638", "accession": "GCA_001695575.1", "taxid": 300876, "species_taxid": 300876, "relation_to_type": "type", "validated": true, "ani": 78.9686, "matched_fragments": 298, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio orientalis", "strain": "strain=CIP 102891", "accession": "GCA_000222645.2", "taxid": 28175, "species_taxid": 28175, "relation_to_type": "type", "validated": true, "ani": 78.8137, "matched_fragments": 293, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio campbellii", "strain": "strain=CAIM 519", "accession": "GCA_000334195.1", "taxid": 680, "species_taxid": 680, "relation_to_type": "type", "validated": true, "ani": 78.8002, "matched_fragments": 291, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliivibrio fischeri", "strain": "strain=DSM 507", "accession": "GCA_023983475.1", "taxid": 668, "species_taxid": 668, "relation_to_type": "suspected-type", "validated": true, "ani": 78.7964, "matched_fragments": 231, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliivibrio fischeri", "strain": "strain=ATCC 7744", "accession": "GCA_016464335.1", "taxid": 668, "species_taxid": 668, "relation_to_type": "suspected-type", "validated": true, "ani": 78.6367, "matched_fragments": 226, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio scophthalmi", "strain": "strain=LMG 19158", "accession": "GCA_000222585.2", "taxid": 45658, "species_taxid": 45658, "relation_to_type": "type", "validated": true, "ani": 78.5939, "matched_fragments": 291, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aestuarianus subsp. cardii", "strain": "strain=12/122 3T3", "accession": "GCA_011090275.1", "taxid": 2807650, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 78.5656, "matched_fragments": 299, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aestuarianus", "strain": "strain=LMG 7909", "accession": "GCA_012395185.1", "taxid": 28171, "species_taxid": 28171, "relation_to_type": "type", "validated": true, "ani": 78.5326, "matched_fragments": 309, "total_fragments": 1709, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900233005.1", "gtdb_species": "s__Vibrio tapetis", "ani": 89.5027, "matched_fragments": 1344, "total_fragments": 1709, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000272045.2", "gtdb_species": "s__Vibrio crassostreae_C", "ani": 79.6093, "matched_fragments": 383, "total_fragments": 1709, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.007, "mean_intra_species_ani": "97.54", "min_intra_species_ani": "97.16", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.87", "num_clustered_genomes": 25, "status": "-" }, { "accession": "GCF_002156525.1", "gtdb_species": "s__Vibrio celticus", "ani": 79.5832, "matched_fragments": 356, "total_fragments": 1709, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.2787, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", 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