{ "type": "genome", "identifier": "GCF_030410015.1", "organism": "Vibrio cortegadensis", "title": "Vibrio cortegadensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Institute of Microbiology of the Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030410015.1", "bioproject": "PRJNA224116", "biosample": "SAMN35653668", "wgs_master": "JAUFQX000000000.1", "refseq_category": "na", "taxid": "1328770", "species_taxid": "1328770", "organism_name": "Vibrio cortegadensis", "infraspecific_name": "strain=CECT 7227", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/07/05", "asm_name": "ASM3041001v1", "asm_submitter": "The Institute of Microbiology of the Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_030410015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/410/015/GCF_030410015.1_ASM3041001v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4534361", "genome_size_ungapped": "4533597", "gc_percent": "42.500000", "replicon_count": "0", "scaffold_count": "87", "contig_count": "87", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030410015.1-RS_2024_07_07", "annotation_date": "2024-07-07", "total_gene_count": "4113", "protein_coding_gene_count": "3936", "non_coding_gene_count": "114", "pubmed_id": "30832757" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-07-05", "dateModified": "2023-07-05", "datePublished": "2023-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio cortegadensis" ], "sample_taxid": [ "1328770" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "1.293 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4534361", "Number of Sequences": "87", "Longest Sequences (bp)": "749108", "N50 (bp)": "452500", "Gap Ratio (%)": "0.016849", "GCcontent (%)": "42.3", "Number of CDSs": "3955", "Average Protein Length": "326.2", "Coding Ratio (%)": "85.3", "Number of rRNAs": "8", "Number of tRNAs": "83", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio cortegadensis", "strain": "strain=CECT 7227", "accession": "GCA_024347395.1", "taxid": 1328770, "species_taxid": 1328770, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio coralliirubri", "strain": "strain=Corallo1", "accession": "GCA_002156455.1", "taxid": 1516159, "species_taxid": 1516159, "relation_to_type": "type", "validated": true, "ani": 80.5983, "matched_fragments": 483, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio coralliirubri", "strain": "strain=DSM 27495", "accession": "GCA_024347375.1", "taxid": 1516159, "species_taxid": 1516159, "relation_to_type": "type", "validated": true, "ani": 80.59, "matched_fragments": 498, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gallaecicus", "strain": "strain=VB 8.9", "accession": "GCA_013416885.1", "taxid": 552386, "species_taxid": 552386, "relation_to_type": "type", "validated": true, "ani": 80.5321, "matched_fragments": 526, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gallaecicus", "strain": "strain=CECT 7244", "accession": "GCA_024347495.1", "taxid": 552386, "species_taxid": 552386, "relation_to_type": "type", "validated": true, "ani": 80.5271, "matched_fragments": 550, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio gallaecicus", "strain": "strain=DSM 23502", "accession": "GCA_005281825.1", "taxid": 552386, "species_taxid": 552386, "relation_to_type": "type", "validated": true, "ani": 80.5254, "matched_fragments": 527, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=CCUG 48643", "accession": "GCA_008801295.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 80.3929, "matched_fragments": 445, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_024347355.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 80.3594, "matched_fragments": 454, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio chagasii", "strain": "strain=LMG 21353", "accession": "GCA_005281815.1", "taxid": 170679, "species_taxid": 170679, "relation_to_type": "suspected-type", "validated": true, "ani": 80.328, "matched_fragments": 444, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio profundi", "strain": "strain=TP187", "accession": "GCA_005281835.1", "taxid": 1774960, "species_taxid": 1774960, "relation_to_type": "type", "validated": true, "ani": 80.139, "matched_fragments": 476, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio aquaticus", "strain": "strain=BEI207", "accession": "GCA_003970385.1", "taxid": 2496559, "species_taxid": 2496559, "relation_to_type": "type", "validated": true, "ani": 79.5765, "matched_fragments": 373, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio renipiscarius", "strain": "strain=DCR 1-4-2", "accession": "GCA_000827885.1", "taxid": 1461322, "species_taxid": 1461322, "relation_to_type": "type", "validated": true, "ani": 79.4619, "matched_fragments": 324, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio ziniensis", "strain": "strain=ZWAL4003", "accession": "GCA_011064285.1", "taxid": 2711221, "species_taxid": 2711221, "relation_to_type": "type", "validated": true, "ani": 79.0447, "matched_fragments": 287, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio halioticoli", "strain": "strain=NBRC 102217", "accession": "GCA_000496695.1", "taxid": 71388, "species_taxid": 71388, "relation_to_type": "type", "validated": true, "ani": 79.0386, "matched_fragments": 214, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio neonatus", "strain": "strain=JCM 21521", "accession": "GCA_024346975.1", "taxid": 278860, "species_taxid": 278860, "relation_to_type": "type", "validated": true, "ani": 78.9636, "matched_fragments": 220, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio penaeicida", "strain": "strain=IFO 15640", "accession": "GCA_019977755.1", "taxid": 104609, "species_taxid": 104609, "relation_to_type": "type", "validated": true, "ani": 78.9286, "matched_fragments": 279, "total_fragments": 1473, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio diazotrophicus", "strain": "strain=NBRC 103148", "accession": "GCA_000740015.1", "taxid": 685, "species_taxid": 685, "relation_to_type": "type", "validated": true, "ani": 78.8933, "matched_fragments": 300, 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