{ "type": "genome", "identifier": "GCF_030509825.1", "organism": "Rhodococcus ruber", "title": "Rhodococcus ruber", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Indonesia Endowment Fund for Education (LPDP)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030509825.1", "bioproject": "PRJNA224116", "biosample": "SAMN35798641", "wgs_master": "JAULCK000000000.1", "refseq_category": "na", "taxid": "1830", "species_taxid": "1830", "organism_name": "Rhodococcus ruber", "infraspecific_name": "strain=LMG 29881", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/07/19", "asm_name": "ASM3050982v1", "asm_submitter": "Indonesia Endowment Fund for Education (LPDP)", "gbrs_paired_asm": "GCA_030509825.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/509/825/GCF_030509825.1_ASM3050982v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from synonym type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5486318", "genome_size_ungapped": "5486318", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "225", "contig_count": "225", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030509825.1-RS_2024_03_16", "annotation_date": "2024-03-16", "total_gene_count": "5196", "protein_coding_gene_count": "5001", "non_coding_gene_count": "71", "pubmed_id": "29957174" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-07-19", "dateModified": "2023-07-19", "datePublished": "2023-07-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Rhodococcus ruber" ], "sample_taxid": [ "1830" ], "sample_host_organism": [ "coral" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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{ "organism_name": "Rhodococcus yananensis", "strain": "strain=FBM22-1", "accession": "GCA_020515525.1", "taxid": 2879464, "species_taxid": 2879464, "relation_to_type": "type", "validated": true, "ani": 80.8615, "matched_fragments": 755, "total_fragments": 1728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardia amamiensis", "strain": "strain=NBRC 102102", "accession": "GCA_001612745.1", "taxid": 404578, "species_taxid": 404578, "relation_to_type": "type", "validated": true, "ani": 78.2958, "matched_fragments": 543, "total_fragments": 1728, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium insubricum", "strain": "strain=JCM 16366", "accession": "GCA_010731615.1", "taxid": 444597, "species_taxid": 444597, "relation_to_type": "type", "validated": true, "ani": 78.0657, "matched_fragments": 420, "total_fragments": 1728, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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"filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Rhodococcus", "ruber" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }