{ "type": "genome", "identifier": "GCF_030540765.1", "organism": "Flavivirga jejuensis", "title": "Flavivirga jejuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Institute of Ocean Science & Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030540765.1", "bioproject": "PRJNA224116", "biosample": "SAMN36549767", "wgs_master": "JAUOEL000000000.1", "refseq_category": "reference genome", "taxid": "870487", "species_taxid": "870487", "organism_name": "Flavivirga jejuensis", "infraspecific_name": "strain=KACC 14158", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/07/25", "asm_name": "ASM3054076v1", "asm_submitter": "Korea Institute of Ocean Science & Technology", "gbrs_paired_asm": "GCA_030540765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/540/765/GCF_030540765.1_ASM3054076v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6017851", "genome_size_ungapped": "6017351", "gc_percent": "32.500000", "replicon_count": "0", "scaffold_count": "33", "contig_count": "33", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030540765.1-RS_2024_07_25", "annotation_date": "2024-07-25", "total_gene_count": "4823", "protein_coding_gene_count": "4744", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-07-25", "dateModified": "2023-07-25", "datePublished": "2023-07-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavivirga jejuensis" ], "sample_taxid": [ "870487" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju Island" ], "sample_host_location_id": [], "data_size": "1.663 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6017851", "Number of Sequences": "33", "Longest Sequences (bp)": "1275055", "N50 (bp)": "571894", "Gap Ratio (%)": "0.008309", "GCcontent (%)": "32.3", "Number of CDSs": "4775", "Average Protein Length": "354.1", "Coding Ratio (%)": "84.3", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavivirga rizhaonensis", "strain": "strain=RZ03", "accession": "GCA_004791695.1", "taxid": 2559571, "species_taxid": 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"below_threshold" }, { "organism_name": "Pontimicrobium aquaticum", "strain": "strain=CAU 1491", "accession": "GCA_005047595.1", "taxid": 2565367, "species_taxid": 2565367, "relation_to_type": "type", "validated": true, "ani": 77.6891, "matched_fragments": 285, "total_fragments": 1991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariivivens marinum", "strain": "strain=MT3-5-12", "accession": "GCA_022662175.1", "taxid": 2913555, "species_taxid": 2913555, "relation_to_type": "type", "validated": true, "ani": 77.394, "matched_fragments": 296, "total_fragments": 1991, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella aquatilis", "strain": "strain=SJ7", "accession": "GCA_014270105.1", "taxid": 2762758, "species_taxid": 2762758, "relation_to_type": "type", "validated": true, "ani": 77.2546, "matched_fragments": 175, "total_fragments": 1991, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 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