{ "type": "genome", "identifier": "GCF_030540875.1", "organism": "Flavivirga amylovorans", "title": "Flavivirga amylovorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Institute of Ocean Science & Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030540875.1", "bioproject": "PRJNA224116", "biosample": "SAMN36549766", "wgs_master": "JAUOEM000000000.1", "refseq_category": "reference genome", "taxid": "870486", "species_taxid": "870486", "organism_name": "Flavivirga amylovorans", "infraspecific_name": "strain=KACC 14157", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/07/25", "asm_name": "ASM3054087v1", "asm_submitter": "Korea Institute of Ocean Science & Technology", "gbrs_paired_asm": "GCA_030540875.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/540/875/GCF_030540875.1_ASM3054087v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4858098", "genome_size_ungapped": "4857798", "gc_percent": "32.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030540875.1-RS_2024_07_25", "annotation_date": "2024-07-25", "total_gene_count": "4122", "protein_coding_gene_count": "4035", "non_coding_gene_count": "64", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-07-25", "dateModified": "2023-07-25", "datePublished": "2023-07-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavivirga amylovorans" ], "sample_taxid": [ "870486" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Jeju Island" ], "sample_host_location_id": [], "data_size": "1.349 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4858098", "Number of Sequences": "14", "Longest Sequences (bp)": "1277550", "N50 (bp)": "762394", "Gap Ratio (%)": "0.006175", "GCcontent (%)": "32.4", "Number of CDSs": "4061", "Average Protein Length": "352.3", "Coding Ratio (%)": "88.3", "Number of rRNAs": "1", "Number of tRNAs": "53", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavivirga rizhaonensis", "strain": "strain=RZ03", "accession": "GCA_004791695.1", "taxid": 2559571, "species_taxid": 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"below_threshold" }, { "organism_name": "Tamlana haliotis", "strain": "strain=B1N29", "accession": "GCA_008806375.1", "taxid": 2614804, "species_taxid": 2614804, "relation_to_type": "type", "validated": true, "ani": 78.0258, "matched_fragments": 359, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 77.996, "matched_fragments": 382, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hanstruepera flava", "strain": "strain=NBU2984", "accession": "GCA_023634025.1", "taxid": 2930218, "species_taxid": 2930218, "relation_to_type": "type", "validated": true, "ani": 77.5269, "matched_fragments": 256, "total_fragments": 1612, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyunsoonleella ulvae", "strain": 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