{ "type": "genome", "identifier": "GCF_030704205.1", "organism": "Halomonas alkalicola", "title": "Halomonas alkalicola", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China National Research Institute of Food and Fermentation Industries", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030704205.1", "bioproject": "PRJNA224116", "biosample": "SAMN36780007", "wgs_master": "na", "refseq_category": "na", "taxid": "1930622", "species_taxid": "1930622", "organism_name": "Halomonas alkalicola", "infraspecific_name": "strain=CICC 11012s", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/08/09", "asm_name": "ASM3070420v1", "asm_submitter": "China National Research Institute of Food and Fermentation Industries", "gbrs_paired_asm": "GCA_030704205.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/704/205/GCF_030704205.1_ASM3070420v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3611010", "genome_size_ungapped": "3611010", "gc_percent": "67.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030704205.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "3406", "protein_coding_gene_count": "3170", "non_coding_gene_count": "81", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-08-09", "dateModified": "2023-08-09", "datePublished": "2023-08-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Halomonas alkalicola" ], "sample_taxid": [ "1930622" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.980 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3611010", "Number of Sequences": "1", "Longest Sequences (bp)": "3611010", "N50 (bp)": "3611010", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.6", "Number of CDSs": "3441", "Average Protein Length": "314.1", "Coding Ratio (%)": "89.8", "Number of rRNAs": "12", "Number of tRNAs": "66", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halomonas campaniensis", "strain": "strain=5AG", "accession": "GCA_014193375.1", "taxid": 213554, "species_taxid": 213554, "relation_to_type": "type", "validated": true, "ani": 88.9561, "matched_fragments": 906, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 87.1467, "matched_fragments": 825, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas alimentaria", "strain": "strain=DSM 15356", "accession": "GCA_009902005.1", "taxid": 147248, "species_taxid": 147248, "relation_to_type": "type", "validated": true, "ani": 86.015, "matched_fragments": 797, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=DSM 26881", "accession": "GCA_002879645.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 85.5563, "matched_fragments": 809, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas heilongjiangensis", "strain": "strain=9-2", "accession": "GCA_003202165.1", "taxid": 1387883, "species_taxid": 1387883, "relation_to_type": "type", "validated": true, "ani": 85.5269, "matched_fragments": 835, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas denitrificans", "strain": "strain=DSM 18045", "accession": "GCA_003056305.1", "taxid": 370769, "species_taxid": 370769, "relation_to_type": "type", "validated": true, "ani": 85.5148, "matched_fragments": 780, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas campisalis", "strain": "strain=A4", "accession": "GCA_022341425.1", "taxid": 74661, "species_taxid": 74661, "relation_to_type": "type", "validated": true, "ani": 85.3887, "matched_fragments": 840, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas halophila", "strain": "strain=NBRC 102604", "accession": "GCA_007989465.1", "taxid": 29573, "species_taxid": 29573, "relation_to_type": "type", "validated": true, "ani": 84.0686, "matched_fragments": 704, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas stenophila", "strain": "strain=CECT 7744", "accession": "GCA_014192275.1", "taxid": 795312, "species_taxid": 795312, "relation_to_type": "type", "validated": true, "ani": 84.0345, "matched_fragments": 784, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 83.8197, "matched_fragments": 764, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas lysinitropha", "strain": "strain=3(2)", "accession": "GCA_902500215.1", "taxid": 2607506, "species_taxid": 2607506, "relation_to_type": "type", "validated": true, "ani": 83.4173, "matched_fragments": 742, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas halodenitrificans", "strain": "strain=DSM 735", "accession": "GCA_000620045.1", "taxid": 28252, "species_taxid": 28252, "relation_to_type": "type", "validated": true, "ani": 83.2606, "matched_fragments": 737, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas cerina", "strain": "strain=CECT 7282", "accession": "GCA_014192215.1", "taxid": 447424, "species_taxid": 447424, "relation_to_type": "type", "validated": true, "ani": 83.1221, "matched_fragments": 754, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidivorans", "strain": "strain=MCCC 1A13718", "accession": "GCA_017868935.1", "taxid": 2733488, "species_taxid": 2733488, "relation_to_type": "type", "validated": true, "ani": 83.0677, "matched_fragments": 739, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", "accession": "GCA_009834345.1", "taxid": 2497861, "species_taxid": 2497861, "relation_to_type": "type", "validated": true, "ani": 82.7896, "matched_fragments": 771, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas zhangzhouensis", "strain": "strain=MCCC 1A11036", "accession": "GCA_021404465.1", "taxid": 2733481, "species_taxid": 2733481, "relation_to_type": "type", "validated": true, "ani": 82.4049, "matched_fragments": 709, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae pv. coryli", "strain": "strain=ICMP17001", "accession": "GCA_001400235.1", "taxid": 317659, "species_taxid": 317659, "relation_to_type": "pathovar", "validated": true, "ani": 76.6086, "matched_fragments": 126, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas syringae pv. coryli", "strain": "strain=NCPPB 4273", "accession": "GCA_000972175.1", "taxid": 317659, "species_taxid": 317659, "relation_to_type": "pathovar", "validated": true, "ani": 76.5235, "matched_fragments": 142, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter tataouinensis", "strain": "strain=TTB310", "accession": "GCA_000215705.1", "taxid": 94132, "species_taxid": 94132, "relation_to_type": "type", "validated": true, "ani": 76.5166, "matched_fragments": 226, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dissulfurirhabdus thermomarina", "strain": "strain=DSM 100025", "accession": "GCA_010499435.1", "taxid": 1765737, "species_taxid": 1765737, "relation_to_type": "type", "validated": true, "ani": 75.6276, "matched_fragments": 62, "total_fragments": 1203, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003182195.1", "gtdb_species": "s__Halomonas sp003182195", "ani": 95.4958, "matched_fragments": 877, "total_fragments": 1203, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.47", "min_intra_species_ani": "95.24", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_014859505.1", "gtdb_species": "s__Halomonas sp014859505", "ani": 90.5355, "matched_fragments": 776, "total_fragments": 1203, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Halomonas", "alkalicola" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }