{ "type": "genome", "identifier": "GCF_030710225.1", "organism": "Pseudoalteromonas distincta", "title": "Pseudoalteromonas distincta", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Southern Oregon University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030710225.1", "bioproject": "PRJNA224116", "biosample": "SAMN34176289", "wgs_master": "JASGWX000000000.1", "refseq_category": "na", "taxid": "77608", "species_taxid": "77608", "organism_name": "Pseudoalteromonas distincta", "infraspecific_name": "strain=LMG 14908", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/08/11", "asm_name": "ASM3071022v1", "asm_submitter": "Southern Oregon University", "gbrs_paired_asm": "GCA_030710225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/710/225/GCF_030710225.1_ASM3071022v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from synonym type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4485450", "genome_size_ungapped": "4484850", "gc_percent": "39.000000", "replicon_count": "0", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030710225.1-RS_2024_08_18", "annotation_date": "2024-08-18", "total_gene_count": "4039", "protein_coding_gene_count": "3894", "non_coding_gene_count": "106", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-08-11", "dateModified": "2023-08-11", "datePublished": "2023-08-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudoalteromonas distincta" ], "sample_taxid": [ "77608" ], "sample_host_organism": [ "Crenomytilus grayanus (Far-Eastern mussel)" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia:Troitsa Bay" ], "sample_host_location_id": [], "data_size": "1.269 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4485450", "Number of Sequences": "37", "Longest Sequences (bp)": "656934", "N50 (bp)": "243696", "Gap Ratio (%)": "0.013377", "GCcontent (%)": "39.2", "Number of CDSs": "3947", "Average Protein Length": "331.1", "Coding Ratio (%)": "87.4", "Number of rRNAs": "3", "Number of tRNAs": "89", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudoalteromonas distincta", "strain": "strain=ATCC 700518", "accession": "GCA_000814675.1", "taxid": 77608, "species_taxid": 77608, "relation_to_type": "type", "validated": true, "ani": 99.9935, "matched_fragments": 1473, "total_fragments": 1474, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudoalteromonas arctica", "strain": "strain=A 37-1-2", "accession": "GCA_000238395.4", "taxid": 394751, "species_taxid": 394751, "relation_to_type": "type", "validated": true, "ani": 94.0076, "matched_fragments": 1279, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas fuliginea", "strain": "strain=KMM 216", "accession": "GCA_000690055.1", "taxid": 1872678, "species_taxid": 1872678, "relation_to_type": "type", "validated": true, "ani": 91.388, "matched_fragments": 1117, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas aliena", "strain": "strain=SW19", "accession": "GCA_014905615.1", "taxid": 247523, "species_taxid": 247523, "relation_to_type": "type", "validated": true, "ani": 87.144, "matched_fragments": 998, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas carrageenovora", "strain": "strain=ATCC 43555", "accession": "GCA_900239935.1", "taxid": 227, "species_taxid": 227, "relation_to_type": "type", "validated": true, "ani": 85.609, "matched_fragments": 1148, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas carrageenovora", "strain": "strain=IAM 12662", "accession": "GCA_014925295.1", "taxid": 227, "species_taxid": 227, "relation_to_type": "type", "validated": true, "ani": 85.5562, "matched_fragments": 1130, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas carrageenovora", "strain": "strain=NBRC 12985", "accession": "GCA_006539245.1", "taxid": 227, "species_taxid": 227, "relation_to_type": "type", "validated": true, "ani": 85.4975, "matched_fragments": 1104, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas espejiana", "strain": "strain=NBRC 102222", "accession": "GCA_007989585.1", "taxid": 28107, "species_taxid": 28107, "relation_to_type": "type", "validated": true, "ani": 83.4972, "matched_fragments": 1002, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas nigrifaciens", "strain": "strain=NCTC10691", "accession": "GCA_900455185.1", "taxid": 28109, "species_taxid": 28109, "relation_to_type": "type", "validated": true, "ani": 82.662, "matched_fragments": 855, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas translucida", "strain": "strain=KMM 520", "accession": "GCA_001465295.1", "taxid": 166935, "species_taxid": 166935, "relation_to_type": "type", "validated": true, "ani": 82.632, "matched_fragments": 861, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas rhizosphaerae", "strain": "strain=RA15", "accession": "GCA_902498845.1", "taxid": 2518973, "species_taxid": 2518973, "relation_to_type": "type", "validated": true, "ani": 80.2203, "matched_fragments": 631, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas galatheae", "strain": "strain=S4498", "accession": "GCA_005886105.2", "taxid": 579562, "species_taxid": 579562, "relation_to_type": "type", "validated": true, "ani": 77.762, "matched_fragments": 198, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia ponticola", "strain": "strain=OISW-25", "accession": "GCA_005885605.1", "taxid": 2304625, "species_taxid": 2304625, "relation_to_type": "type", "validated": true, "ani": 76.6075, "matched_fragments": 89, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella vesiculosa", "strain": "strain=M7", "accession": "GCA_021560015.1", "taxid": 518738, "species_taxid": 518738, "relation_to_type": "type", "validated": true, "ani": 76.4951, "matched_fragments": 74, "total_fragments": 1474, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000814675.1", "gtdb_species": "s__Pseudoalteromonas distincta", "ani": 99.9935, "matched_fragments": 1473, "total_fragments": 1474, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.26", "min_intra_species_ani": "95.34", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.77", "num_clustered_genomes": 38, "status": "conclusive" }, { "accession": "GCF_008370255.1", "gtdb_species": "s__Pseudoalteromonas sp008370255", "ani": 94.6396, "matched_fragments": 1249, "total_fragments": 1474, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000238395.3", "gtdb_species": "s__Pseudoalteromonas arctica", "ani": 94.0076, "matched_fragments": 1279, "total_fragments": 1474, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.91", "min_intra_species_ani": "96.03", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.80", "num_clustered_genomes": 33, "status": "-" }, { "accession": "GCF_001974875.1", "gtdb_species": "s__Pseudoalteromonas sp001974875", "ani": 93.0374, 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91.4023, "matched_fragments": 1116, "total_fragments": 1474, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "97.88", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_000239855.1", "gtdb_species": "s__Pseudoalteromonas sp000239855", "ani": 91.1167, "matched_fragments": 1087, "total_fragments": 1474, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014905615.1", "gtdb_species": "s__Pseudoalteromonas aliena", "ani": 87.1417, "matched_fragments": 998, "total_fragments": 1474, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudoalteromonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.51", "min_intra_species_ani": "97.10", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 7, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.046, "cell_length": 0.397, "doubling_h": 0.348, "growth_tmp": 26.5, "optimum_tmp": 24.901, "optimum_ph": 7.588, "genome_size": 4532748.0, "gc_content": 41.108, "coding_genes": 3972.54, "rRNA16S_genes": 8.705, "tRNA_genes": 104.429, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.941, "range_salinity": 0.8, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pseudoalteromonas", "distincta" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }