{ "type": "genome", "identifier": "GCF_030811455.1", "organism": "Streptosporangium lutulentum", "title": "Streptosporangium lutulentum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030811455.1", "bioproject": "PRJNA224116", "biosample": "SAMN18244834", "wgs_master": "JAUSQU000000000.1", "refseq_category": "reference genome", "taxid": "1461250", "species_taxid": "1461250", "organism_name": "Streptosporangium lutulentum", "infraspecific_name": "strain=DSM 46740", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/08/18", "asm_name": "ASM3081145v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_030811455.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/811/455/GCF_030811455.1_ASM3081145v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10639158", "genome_size_ungapped": "10639158", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030811455.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "9591", "protein_coding_gene_count": "9376", "non_coding_gene_count": "93", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-08-18", "dateModified": "2023-08-18", "datePublished": "2023-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptosporangium lutulentum" ], "sample_taxid": [ "1461250" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.888 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.82, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10639158", "Number of Sequences": "3", "Longest Sequences (bp)": "10328227", "N50 (bp)": "10328227", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.1", "Number of CDSs": "9791", "Average Protein Length": "312.2", "Coding Ratio (%)": "86.2", "Number of rRNAs": "18", "Number of tRNAs": "81", "Number of CRISPRs": "6" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptosporangium canum", "strain": "strain=CGMCC 4.2126", "accession": "GCA_900113865.1", "taxid": 324952, "species_taxid": 324952, "relation_to_type": "type", "validated": true, "ani": 86.1024, "matched_fragments": 1896, "total_fragments": 3544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium roseum", "strain": "strain=DSM 43021", "accession": "GCA_000024865.1", "taxid": 2001, "species_taxid": 2001, "relation_to_type": "type", "validated": true, "ani": 86.0039, "matched_fragments": 2044, "total_fragments": 3544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium minutum", "strain": "strain=M26", "accession": "GCA_002149035.1", "taxid": 569862, "species_taxid": 569862, "relation_to_type": "type", "validated": true, "ani": 85.8681, "matched_fragments": 1814, "total_fragments": 3544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium album", "strain": "strain=DSM 43023", "accession": "GCA_014203795.1", "taxid": 47479, "species_taxid": 47479, "relation_to_type": "type", "validated": true, "ani": 85.2938, "matched_fragments": 1826, "total_fragments": 3544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium amethystogenes", "strain": "strain=NRRL B-2639", "accession": "GCA_000721075.1", "taxid": 2002, "species_taxid": 2002, "relation_to_type": "type", "validated": true, "ani": 84.9704, "matched_fragments": 1771, "total_fragments": 3544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora takensis", "strain": "strain=NBRC 109077", "accession": "GCA_016863195.1", "taxid": 1367882, "species_taxid": 1367882, "relation_to_type": "type", "validated": true, "ani": 83.3766, "matched_fragments": 1644, "total_fragments": 3544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium sandarakinum", "strain": "strain=DSM 45763", "accession": "GCA_013409935.1", "taxid": 1260955, "species_taxid": 1260955, "relation_to_type": "type", "validated": true, "ani": 83.3763, "matched_fragments": 1636, "total_fragments": 3544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptosporangium pseudovulgare", "strain": "strain=JCM 3115", "accession": "GCA_014648055.1", "taxid": 35765, "species_taxid": 35765, "relation_to_type": "type", "validated": true, "ani": 83.3022, "matched_fragments": 1686, "total_fragments": 3544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora siamensis", "strain": "strain=NBRC 107568", "accession": "GCA_016863175.1", "taxid": 936338, "species_taxid": 936338, "relation_to_type": "type", "validated": true, "ani": 83.265, "matched_fragments": 1648, "total_fragments": 3544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rhizosphaerae", "strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 80.0059, "matched_fragments": 942, "total_fragments": 3544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea aurantiaca", "strain": "strain=NEAU-L178", "accession": "GCA_020215705.1", "taxid": 2878562, "species_taxid": 2878562, "relation_to_type": "type", "validated": true, "ani": 79.9112, "matched_fragments": 1517, "total_fragments": 3544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 79.907, "matched_fragments": 1432, "total_fragments": 3544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea basaltis", "strain": "strain=160415", "accession": "GCA_005893125.1", "taxid": 2495887, "species_taxid": 2495887, "relation_to_type": "type", "validated": true, "ani": 79.7483, "matched_fragments": 1491, "total_fragments": 3544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea typhae", "strain": "strain=p1410", "accession": "GCA_009760925.1", "taxid": 2603600, "species_taxid": 2603600, "relation_to_type": "type", "validated": true, "ani": 79.3097, "matched_fragments": 1418, "total_fragments": 3544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces fagopyri", "strain": "strain=QMT-28", "accession": "GCA_009498275.1", "taxid": 2662397, "species_taxid": 2662397, "relation_to_type": "type", "validated": true, "ani": 76.8061, "matched_fragments": 656, "total_fragments": 3544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces parmotrematis", "strain": "strain=Ptm05", "accession": "GCA_019890615.1", "taxid": 2873249, "species_taxid": 2873249, "relation_to_type": "type", "validated": true, "ani": 76.79, "matched_fragments": 613, "total_fragments": 3544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rapamycinicus", "strain": "strain=NRRL 5491", "accession": "GCA_003675955.1", "taxid": 1226757, "species_taxid": 1226757, "relation_to_type": "type", "validated": true, "ani": 76.5393, "matched_fragments": 821, "total_fragments": 3544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces atriruber", "strain": "strain=NRRL B-24165", "accession": "GCA_001418325.1", "taxid": 545121, "species_taxid": 545121, "relation_to_type": "type", "validated": true, "ani": 76.4899, "matched_fragments": 622, "total_fragments": 3544, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces alanosinicus", "strain": "strain=JCM 4714", "accession": "GCA_014650595.1", "taxid": 68171, "species_taxid": 68171, "relation_to_type": "type", "validated": true, "ani": 76.3812, "matched_fragments": 718, "total_fragments": 3544, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 3.82, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900188345.1", "gtdb_species": "s__Streptosporangium subroseum", "ani": 90.9855, "matched_fragments": 2528, "total_fragments": 3544, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Streptosporangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.81", "min_intra_species_ani": "95.81", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900113865.1", "gtdb_species": "s__Streptosporangium canum", "ani": 86.0746, "matched_fragments": 1900, "total_fragments": 3544, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Streptosporangium", "ani_circumscription_radius": 95.8736, "mean_intra_species_ani": "96.48", "min_intra_species_ani": "96.48", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000024865.1", "gtdb_species": "s__Streptosporangium roseum", "ani": 86.0112, "matched_fragments": 2041, "total_fragments": 3544, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Streptosporangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002149035.1", "gtdb_species": "s__Streptosporangium minutum", "ani": 85.8653, "matched_fragments": 1814, "total_fragments": 3544, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Streptosporangium", "ani_circumscription_radius": 95.8736, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014203795.1", "gtdb_species": "s__Streptosporangium album", "ani": 85.2969, "matched_fragments": 1828, "total_fragments": 3544, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Streptosporangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000721075.1", "gtdb_species": "s__Streptosporangium amethystogenes", "ani": 84.9944, "matched_fragments": 1766, "total_fragments": 3544, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Streptosporangium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_015711605.1", "gtdb_species": "s__Planomonospora_A sp015711605", "ani": 83.5984, "matched_fragments": 1587, "total_fragments": 3544, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Planomonospora_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016863195.1", "gtdb_species": "s__Planobispora takensis", "ani": 83.3793, "matched_fragments": 1644, "total_fragments": 3544, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Planobispora", "ani_circumscription_radius": 95.117, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016863175.1", "gtdb_species": "s__Planobispora siamensis", "ani": 83.2962, "matched_fragments": 1642, "total_fragments": 3544, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Planobispora", "ani_circumscription_radius": 95.117, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014648055.1", "gtdb_species": "s__Streptosporangium pseudovulgare", "ani": 83.2754, "matched_fragments": 1692, "total_fragments": 3544, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Streptosporangium", "ani_circumscription_radius": 96.6013, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_014647935.1", "gtdb_species": "s__Planomonospora parontospora", "ani": 83.2363, "matched_fragments": 1619, "total_fragments": 3544, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptosporangiales;f__Streptosporangiaceae;g__Planomonospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.40", "min_intra_species_ani": "95.90", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_009498275.1", "gtdb_species": "s__Streptomyces fagopyri", "ani": 76.7821, "matched_fragments": 658, "total_fragments": 3544, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008042115.1", "gtdb_species": "s__Streptomyces sp008042115", "ani": 76.7416, "matched_fragments": 689, "total_fragments": 3544, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001418325.1", "gtdb_species": "s__Streptomyces atriruber", "ani": 76.4729, "matched_fragments": 630, "total_fragments": 3544, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014650595.1", "gtdb_species": "s__Streptomyces alanosinicus", "ani": 76.3867, "matched_fragments": 720, "total_fragments": 3544, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": -0.125, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 28.6, "optimum_ph": 7.275, "genome_size": 9958370.416, "gc_content": 70.459, "coding_genes": 8892.0, "rRNA16S_genes": 6.0, "tRNA_genes": 63.0, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.6, "coccus_cell_shape": 0.2, "filament_cell_shape": 0.2, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Streptosporangium", "lutulentum" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }