{
    "type": "genome",
    "identifier": "GCF_030812915.1",
    "organism": "Alkalibacillus salilacus",
    "title": "Alkalibacillus salilacus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_030812915.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18242938",
        "wgs_master": "JAUSTQ000000000.1",
        "refseq_category": "reference genome",
        "taxid": "284582",
        "species_taxid": "284582",
        "organism_name": "Alkalibacillus salilacus",
        "infraspecific_name": "strain=DSM 16460",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/08/18",
        "asm_name": "ASM3081291v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_030812915.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/812/915/GCF_030812915.1_ASM3081291v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2729834",
        "genome_size_ungapped": "2729834",
        "gc_percent": "38.000000",
        "replicon_count": "0",
        "scaffold_count": "30",
        "contig_count": "30",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_030812915.1-RS_2024_08_20",
        "annotation_date": "2024-08-20",
        "total_gene_count": "2891",
        "protein_coding_gene_count": "2808",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-08-18",
    "dateModified": "2023-08-18",
    "datePublished": "2023-08-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alkalibacillus salilacus"
        ],
        "sample_taxid": [
            "284582"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China"
        ],
        "sample_host_location_id": [],
        "data_size": "0.776 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2729834",
        "Number of Sequences": "30",
        "Longest Sequences (bp)": "411639",
        "N50 (bp)": "187034",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.2",
        "Number of CDSs": "2864",
        "Average Protein Length": "276.6",
        "Coding Ratio (%)": "87.1",
        "Number of rRNAs": "2",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Alkalibacillus almallahensis",
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                "accession": "GCA_011761495.1",
                "taxid": 1379154,
                "species_taxid": 1379154,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
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            {
                "organism_name": "Alkalibacillus haloalkaliphilus",
                "strain": "strain=NBRC 103110",
                "accession": "GCA_007991275.1",
                "taxid": 94136,
                "species_taxid": 94136,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9181,
                "matched_fragments": 235,
                "total_fragments": 894,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalibacillus aidingensis",
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                "accession": "GCA_014595945.1",
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                "ani": 77.2959,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Piscibacillus halophilus",
                "strain": "strain=DSM 21633",
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                "taxid": 571933,
                "species_taxid": 571933,
                "relation_to_type": "type",
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                "ani": 77.0973,
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                "total_fragments": 894,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halalkalibacillus halophilus",
                "strain": "strain=DSM 18494",
                "accession": "GCA_000423105.1",
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                "species_taxid": 392827,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0657,
                "matched_fragments": 119,
                "total_fragments": 894,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Allobacillus salarius",
                "strain": "strain=SKP4-8",
                "accession": "GCA_007559425.1",
                "taxid": 1955272,
                "species_taxid": 1955272,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9514,
                "matched_fragments": 63,
                "total_fragments": 894,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halalkalibacillus sediminis",
                "strain": "strain=B3227",
                "accession": "GCA_002844535.1",
                "taxid": 2018042,
                "species_taxid": 2018042,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.818,
                "matched_fragments": 87,
                "total_fragments": 894,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
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                "accession": "GCF_011761495.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
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                "total_fragments": 894,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Alkalibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000269905.1",
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                "matched_fragments": 212,
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Alkalibacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004402015.1",
                "gtdb_species": "s__Filobacillus milosensis",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_D;f__Alkalibacillaceae;g__Filobacillus",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
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            },
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                "mean_intra_species_ani": "N/A",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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            {
                "accession": "GCF_007559425.1",
                "gtdb_species": "s__Allobacillus sp007559425",
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                "matched_fragments": 61,
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_002844535.1",
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                "matched_fragments": 86,
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.204,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 33.812,
        "optimum_ph": 9.0,
        "genome_size": 2908057.0,
        "gc_content": 37.1,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 1.0,
        "sporulation": 1.0,
        "motility": 0.666,
        "range_salinity": 1.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
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        "salilacus"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}