{ "type": "genome", "identifier": "GCF_030812925.1", "organism": "Alicyclobacillus cycloheptanicus", "title": "Alicyclobacillus cycloheptanicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030812925.1", "bioproject": "PRJNA224116", "biosample": "SAMN18243353", "wgs_master": "JAUSTP000000000.1", "refseq_category": "na", "taxid": "1457", "species_taxid": "1457", "organism_name": "Alicyclobacillus cycloheptanicus", "infraspecific_name": "strain=DSM 4006", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/08/18", "asm_name": "ASM3081292v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_030812925.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/812/925/GCF_030812925.1_ASM3081292v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3591593", "genome_size_ungapped": "3591593", "gc_percent": "58.500000", "replicon_count": "0", "scaffold_count": "91", "contig_count": "91", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030812925.1-RS_2024_12_23", "annotation_date": "2024-12-23", "total_gene_count": "3451", "protein_coding_gene_count": "3330", "non_coding_gene_count": "77", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-08-18", "dateModified": "2023-08-18", "datePublished": "2023-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Alicyclobacillus cycloheptanicus" ], "sample_taxid": [ "1457" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.018 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3591593", "Number of Sequences": "91", "Longest Sequences (bp)": "368298", "N50 (bp)": "96930", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.5", "Number of CDSs": "3457", "Average Protein Length": "293.2", "Coding Ratio (%)": "84.7", "Number of rRNAs": "1", "Number of tRNAs": "70", "Number of CRISPRs": "12" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alicyclobacillus suci", "strain": "strain=VF-FSL-W10-0049", "accession": "GCA_017329615.1", "taxid": 2816080, "species_taxid": 2816080, "relation_to_type": "type", "validated": true, "ani": 78.6851, 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"coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.066, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Alicyclobacillus", "cycloheptanicus" ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }