{ "type": "genome", "identifier": "GCF_030813005.1", "organism": "Robertmurraya andreesenii", "title": "Robertmurraya andreesenii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030813005.1", "bioproject": "PRJNA224116", "biosample": "SAMN18243026", "wgs_master": "JAUSTU000000000.1", "refseq_category": "reference genome", "taxid": "1325932", "species_taxid": "1325932", "organism_name": "Robertmurraya andreesenii", "infraspecific_name": "strain=DSM 23948", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/08/18", "asm_name": "ASM3081300v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_030813005.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/813/005/GCF_030813005.1_ASM3081300v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4336975", "genome_size_ungapped": "4336975", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "79", "contig_count": "79", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030813005.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "4391", "protein_coding_gene_count": "4208", "non_coding_gene_count": "110", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-08-18", "dateModified": "2023-08-18", "datePublished": "2023-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Robertmurraya andreesenii" ], "sample_taxid": [ "1325932" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.235 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4336975", "Number of Sequences": "79", "Longest Sequences (bp)": "412383", "N50 (bp)": "174938", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.2", "Number of CDSs": "4289", "Average Protein Length": "289.6", "Coding Ratio (%)": "85.9", "Number of rRNAs": "2", "Number of tRNAs": "86", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Heyndrickxia oleronia", "strain": "strain=DSM 9356", "accession": "GCA_025263665.1", "taxid": 38875, "species_taxid": 38875, "relation_to_type": "type", "validated": true, "ani": 79.6053, "matched_fragments": 97, 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alkalitelluris", "strain": "strain=DSM 16976", "accession": "GCA_002019645.1", "taxid": 304268, "species_taxid": 304268, "relation_to_type": "type", "validated": true, "ani": 77.838, "matched_fragments": 72, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus dafuensis", "strain": "strain=FJAT-25496", "accession": "GCA_007995155.1", "taxid": 1742359, "species_taxid": 1742359, "relation_to_type": "type", "validated": true, "ani": 77.8094, "matched_fragments": 168, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cytobacillus horneckiae", "strain": "strain=1P01SC", "accession": "GCA_002835735.1", "taxid": 549687, "species_taxid": 549687, "relation_to_type": "type", "validated": true, "ani": 77.7611, "matched_fragments": 116, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niallia nealsonii", "strain": "strain=FO-92", "accession": "GCA_002835805.1", "taxid": 115979, "species_taxid": 115979, "relation_to_type": "type", "validated": true, "ani": 77.5491, "matched_fragments": 72, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sutcliffiella halmapala", "strain": "strain=DSM 8723", "accession": "GCA_002019665.1", "taxid": 79882, "species_taxid": 79882, "relation_to_type": "type", "validated": true, "ani": 77.3979, "matched_fragments": 82, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neobacillus endophyticus", "strain": "strain=BRMEA1", "accession": "GCA_013248975.1", "taxid": 2738405, "species_taxid": 2738405, "relation_to_type": "type", "validated": true, "ani": 77.3084, "matched_fragments": 121, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus aquiflavi", "strain": "strain=3H-10", "accession": "GCA_019915265.1", "taxid": 2672567, "species_taxid": 2672567, 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"ani": 77.1221, "matched_fragments": 123, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peribacillus psychrosaccharolyticus", "strain": "strain=ATCC 23296", "accession": "GCA_000305495.2", "taxid": 1407, "species_taxid": 1407, "relation_to_type": "type", "validated": true, "ani": 77.0805, "matched_fragments": 64, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Niallia taxi", "strain": "strain=M5HDSG1-1", "accession": "GCA_004005475.1", "taxid": 2499688, "species_taxid": 2499688, "relation_to_type": "type", "validated": true, "ani": 77.0386, "matched_fragments": 85, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus aquiflavi", "strain": "strain=3H-10", "accession": "GCA_011008855.1", "taxid": 2672567, "species_taxid": 2672567, "relation_to_type": "type", "validated": true, "ani": 76.9726, "matched_fragments": 99, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Margalitia camelliae", "strain": "strain=7578-1", "accession": "GCA_002844575.1", "taxid": 1707093, "species_taxid": 1707093, "relation_to_type": "type", "validated": true, "ani": 76.8498, "matched_fragments": 70, "total_fragments": 1406, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002480735.1", "gtdb_species": "s__Robertmurraya sp002480735", "ani": 98.3458, "matched_fragments": 956, "total_fragments": 1406, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Robertmurraya", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_005116465.1", "gtdb_species": "s__Robertmurraya kyonggiensis", "ani": 79.1245, "matched_fragments": 343, "total_fragments": 1406, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Robertmurraya", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005280205.1", "gtdb_species": "s__Robertmurraya yapensis", "ani": 78.9632, "matched_fragments": 329, "total_fragments": 1406, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Robertmurraya", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000311725.1", "gtdb_species": "s__Robertmurraya massiliosenegalensis", "ani": 78.8581, 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"ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001274725.1", "gtdb_species": "s__Cytobacillus globisporus", "ani": 77.8438, "matched_fragments": 124, "total_fragments": 1406, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Cytobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000724485.1", "gtdb_species": "s__Bacillus_Z methanolicus_A", "ani": 77.8159, "matched_fragments": 101, "total_fragments": 1406, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Bacillus_Z", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002835805.1", "gtdb_species": "s__Niallia nealsonii", "ani": 77.5491, "matched_fragments": 72, "total_fragments": 1406, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Niallia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900103525.1", "gtdb_species": "s__Neobacillus sp900103525", "ani": 77.5097, "matched_fragments": 128, "total_fragments": 1406, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-18226;g__Neobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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