{
    "type": "genome",
    "identifier": "GCF_030813595.1",
    "organism": "Ancylobacter vacuolatus",
    "title": "Ancylobacter vacuolatus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_030813595.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN18243393",
        "wgs_master": "JAUSUH000000000.1",
        "refseq_category": "reference genome",
        "taxid": "223389",
        "species_taxid": "223389",
        "organism_name": "Ancylobacter vacuolatus",
        "infraspecific_name": "strain=DSM 1277",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/08/18",
        "asm_name": "ASM3081359v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_030813595.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/813/595/GCF_030813595.1_ASM3081359v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5020355",
        "genome_size_ungapped": "5020355",
        "gc_percent": "67.500000",
        "replicon_count": "0",
        "scaffold_count": "29",
        "contig_count": "29",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_030813595.1-RS_2024_08_20",
        "annotation_date": "2024-08-20",
        "total_gene_count": "4634",
        "protein_coding_gene_count": "4536",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-08-18",
    "dateModified": "2023-08-18",
    "datePublished": "2023-08-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Ancylobacter vacuolatus"
        ],
        "sample_taxid": [
            "223389"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.365 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5020355",
        "Number of Sequences": "29",
        "Longest Sequences (bp)": "844038",
        "N50 (bp)": "403795",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "67.6",
        "Number of CDSs": "4597",
        "Average Protein Length": "322.1",
        "Coding Ratio (%)": "88.5",
        "Number of rRNAs": "6",
        "Number of tRNAs": "56",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Ancylobacter rudongensis",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Ancylobacter aquaticus",
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                "accession": "GCA_004339465.1",
                "taxid": 100,
                "species_taxid": 100,
                "relation_to_type": "type",
                "validated": true,
                "ani": 90.2427,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "accession": "GCA_018390645.1",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Starkeya koreensis",
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                "accession": "GCA_023016525.1",
                "taxid": 266121,
                "species_taxid": 266121,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.6501,
                "matched_fragments": 1032,
                "total_fragments": 1661,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Starkeya novella",
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                "accession": "GCA_000092925.1",
                "taxid": 921,
                "species_taxid": 921,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.0749,
                "matched_fragments": 1069,
                "total_fragments": 1661,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Xanthobacter oligotrophicus",
                "strain": "strain=29k",
                "accession": "GCA_008364685.1",
                "taxid": 2607286,
                "species_taxid": 2607286,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7294,
                "matched_fragments": 570,
                "total_fragments": 1661,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium oryzihabitans",
                "strain": "strain=TER-1",
                "accession": "GCA_004004555.2",
                "taxid": 2499852,
                "species_taxid": 2499852,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.499,
                "matched_fragments": 495,
                "total_fragments": 1661,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobacterium terricola",
                "strain": "strain=17Sr1-39",
                "accession": "GCA_006151805.1",
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                "species_taxid": 2583531,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.4032,
                "matched_fragments": 490,
                "total_fragments": 1661,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_000378025.1",
                "gtdb_species": "s__Ancylobacter sp000378025",
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                "matched_fragments": 1434,
                "total_fragments": 1661,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Ancylobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_900100155.1",
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.36",
                "min_intra_species_ani": "96.36",
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                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_004339465.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Ancylobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_018390645.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Ancylobacter",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_007559435.1",
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                "matched_fragments": 983,
                "total_fragments": 1661,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Starkeya",
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                "mean_intra_species_ani": "98.55",
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                "num_clustered_genomes": 2,
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            },
            {
                "accession": "GCF_017872635.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Starkeya",
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                "num_clustered_genomes": 2,
                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.097,
        "cell_length": -0.046,
        "doubling_h": null,
        "growth_tmp": 30.0,
        "optimum_tmp": 29.0,
        "optimum_ph": 7.0,
        "genome_size": 4505084.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
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        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
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    "_genome_taxon": [
        "Ancylobacter",
        "vacuolatus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}