{ "type": "genome", "identifier": "GCF_030813695.1", "organism": "Kitasatospora herbaricolor", "title": "Kitasatospora herbaricolor", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030813695.1", "bioproject": "PRJNA224116", "biosample": "SAMN18243429", "wgs_master": "JAUSVA000000000.1", "refseq_category": "reference genome", "taxid": "68217", "species_taxid": "68217", "organism_name": "Kitasatospora herbaricolor", "infraspecific_name": "strain=DSM 40123", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/08/18", "asm_name": "ASM3081369v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_030813695.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/813/695/GCF_030813695.1_ASM3081369v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9581307", "genome_size_ungapped": "9581307", "gc_percent": "73.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030813695.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "8158", "protein_coding_gene_count": "7894", "non_coding_gene_count": "106", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-08-18", "dateModified": "2023-08-18", "datePublished": "2023-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Kitasatospora herbaricolor" ], "sample_taxid": [ "68217" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.522 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 9.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9581307", "Number of Sequences": "3", "Longest Sequences (bp)": "9186014", "N50 (bp)": "9186014", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "73.6", "Number of CDSs": "8321", "Average Protein Length": "327.6", "Coding Ratio (%)": "85.3", "Number of rRNAs": "27", "Number of tRNAs": "103", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Kitasatospora herbaricolor", "strain": "strain=JCM 4138", "accession": "GCA_014648975.1", "taxid": 68217, "species_taxid": 68217, "relation_to_type": "type", "validated": true, "ani": 99.9616, "matched_fragments": 3072, "total_fragments": 3193, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Kitasatospora indigofera", "strain": "strain=JCM 4646", "accession": "GCA_014655955.1", "taxid": 67307, "species_taxid": 67307, "relation_to_type": "type", "validated": true, "ani": 94.4401, "matched_fragments": 2650, "total_fragments": 3193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora atroaurantiaca", "strain": "strain=DSM 41649", "accession": "GCA_007828955.1", "taxid": 285545, "species_taxid": 285545, "relation_to_type": "type", "validated": true, "ani": 84.8709, "matched_fragments": 1617, "total_fragments": 3193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora purpeofusca", "strain": "strain=NRRL B-1817", "accession": "GCA_000718025.1", "taxid": 67352, "species_taxid": 67352, "relation_to_type": "type", "validated": true, "ani": 84.0916, "matched_fragments": 1827, "total_fragments": 3193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora aureofaciens", "strain": "strain=NRRL 2209", "accession": "GCA_000978515.1", "taxid": 1894, "species_taxid": 1894, "relation_to_type": "type", "validated": true, "ani": 84.0587, "matched_fragments": 1448, "total_fragments": 3193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora gansuensis", "strain": "strain=DSM 44786", "accession": "GCA_014203705.1", "taxid": 258050, "species_taxid": 258050, "relation_to_type": "type", "validated": true, "ani": 83.9795, "matched_fragments": 1712, "total_fragments": 3193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rubellomurinus", "strain": "strain=ATCC 31215", "accession": "GCA_000961885.1", "taxid": 359131, "species_taxid": 359131, "relation_to_type": "type", "validated": true, "ani": 83.9546, "matched_fragments": 1655, "total_fragments": 3193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora paracochleata", "strain": "strain=DSM 41656", "accession": "GCA_024172095.1", "taxid": 58354, "species_taxid": 58354, "relation_to_type": "type", "validated": true, "ani": 83.5704, "matched_fragments": 1739, "total_fragments": 3193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora azatica", "strain": "strain=KCTC 9699", "accession": "GCA_000744785.1", "taxid": 58347, "species_taxid": 58347, "relation_to_type": "type", "validated": true, "ani": 83.188, "matched_fragments": 1570, "total_fragments": 3193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora mediocidica", "strain": "strain=KCTC 9733", "accession": "GCA_000744225.1", "taxid": 58352, "species_taxid": 58352, "relation_to_type": "type", "validated": true, "ani": 83.128, "matched_fragments": 1631, "total_fragments": 3193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora kifunensis", "strain": "strain=DSM 41654", "accession": "GCA_014203855.1", "taxid": 58351, "species_taxid": 58351, "relation_to_type": "type", "validated": true, "ani": 82.7326, "matched_fragments": 1554, "total_fragments": 3193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora acidiphila", "strain": "strain=MMS16-CNU292", "accession": "GCA_006636205.1", "taxid": 2567942, "species_taxid": 2567942, "relation_to_type": "type", "validated": true, "ani": 82.4793, "matched_fragments": 1453, "total_fragments": 3193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora viridis", "strain": "strain=DSM 44826", "accession": "GCA_007829815.1", "taxid": 281105, "species_taxid": 281105, "relation_to_type": "type", "validated": true, "ani": 82.331, "matched_fragments": 1686, "total_fragments": 3193, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Kitasatospora humi", "strain": "strain=RB6PN24", "accession": 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"GCF_014648975.1", "gtdb_species": "s__Kitasatospora herbaricolor", "ani": 99.9616, "matched_fragments": 3072, "total_fragments": 3193, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.20", "min_intra_species_ani": "96.20", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_014655955.1", "gtdb_species": "s__Kitasatospora indigofera", "ani": 94.4418, "matched_fragments": 2650, "total_fragments": 3193, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Kitasatospora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": 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