{ "type": "genome", "identifier": "GCF_030813715.1", "organism": "Catenuloplanes indicus", "title": "Catenuloplanes indicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030813715.1", "bioproject": "PRJNA224116", "biosample": "SAMN18242977", "wgs_master": "JAUSUZ000000000.1", "refseq_category": "reference genome", "taxid": "137267", "species_taxid": "137267", "organism_name": "Catenuloplanes indicus", "infraspecific_name": "strain=DSM 44709", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/08/18", "asm_name": "ASM3081371v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_030813715.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/813/715/GCF_030813715.1_ASM3081371v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9247015", "genome_size_ungapped": "9247015", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030813715.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "8388", "protein_coding_gene_count": "8173", "non_coding_gene_count": "86", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-08-18", "dateModified": "2023-08-18", "datePublished": "2023-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Catenuloplanes indicus" ], "sample_taxid": [ "137267" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora pattaloongensis", "strain": "strain=DSM 45245", "accession": "GCA_900107255.1", "taxid": 405436, "species_taxid": 405436, "relation_to_type": "type", "validated": true, "ani": 79.4013, "matched_fragments": 1000, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora chalcea", "strain": "strain=DSM 43026", "accession": "GCA_002926165.1", "taxid": 1874, "species_taxid": 1874, "relation_to_type": "type", "validated": true, "ani": 79.381, "matched_fragments": 1167, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora aurantiaca", "strain": "strain=ATCC 27029", "accession": "GCA_000145235.1", "taxid": 47850, "species_taxid": 47850, "relation_to_type": "type", "validated": true, "ani": 79.3769, "matched_fragments": 1198, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora ferruginea", "strain": "strain=28ISP2-46", "accession": "GCA_013694245.1", "taxid": 2749844, "species_taxid": 2749844, "relation_to_type": "type", "validated": true, "ani": 79.3285, "matched_fragments": 1216, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora sediminicola", "strain": "strain=DSM 45794", "accession": "GCA_900089585.1", "taxid": 946078, "species_taxid": 946078, "relation_to_type": "type", "validated": true, "ani": 79.326, "matched_fragments": 1198, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora tulbaghiae", "strain": "strain=DSM 45142", "accession": "GCA_900091605.1", "taxid": 479978, "species_taxid": 479978, "relation_to_type": "type", "validated": true, "ani": 79.2879, "matched_fragments": 1198, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humi", "strain": "strain=DSM 45647", "accession": "GCA_900090105.1", "taxid": 745366, "species_taxid": 745366, "relation_to_type": "type", "validated": true, "ani": 79.2208, "matched_fragments": 1219, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora aurantiaca", "strain": "strain=ATCC 27029", "accession": "GCA_003721415.1", "taxid": 47850, "species_taxid": 47850, "relation_to_type": "type", "validated": true, "ani": 79.2043, "matched_fragments": 1180, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora acroterricola", "strain": "strain=5R2A7", "accession": "GCA_003172955.1", "taxid": 2202421, "species_taxid": 2202421, "relation_to_type": "type", "validated": true, "ani": 79.2037, "matched_fragments": 1011, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes teichomyceticus", "strain": "strain=ATCC 31121", "accession": "GCA_003711105.1", "taxid": 1867, "species_taxid": 1867, "relation_to_type": "type", "validated": true, "ani": 79.0718, "matched_fragments": 1305, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora fulviviridis", "strain": "strain=JCM 3259", "accession": "GCA_014648395.1", "taxid": 47860, "species_taxid": 47860, "relation_to_type": "type", "validated": true, "ani": 79.0672, "matched_fragments": 1187, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora halophytica", "strain": "strain=DSM 43171", "accession": "GCA_900090245.1", "taxid": 47864, "species_taxid": 47864, "relation_to_type": "type", "validated": true, "ani": 78.9288, "matched_fragments": 1091, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora endolithica", "strain": "strain=JCM 12677", "accession": "GCA_003626595.1", "taxid": 230091, "species_taxid": 230091, "relation_to_type": "type", "validated": true, "ani": 78.9111, "matched_fragments": 1114, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes nipponensis", "strain": "strain=NBRC 14063", "accession": "GCA_016862275.1", "taxid": 135950, "species_taxid": 135950, "relation_to_type": "type", "validated": true, "ani": 78.8537, "matched_fragments": 1358, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora humida", "strain": "strain=MMS20-R1-14", "accession": "GCA_016901255.1", "taxid": 2809018, "species_taxid": 2809018, "relation_to_type": "type", "validated": true, "ani": 78.8306, "matched_fragments": 1141, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoplanes ianthinogenes", "strain": "strain=NBRC 13996", "accession": "GCA_018324205.1", "taxid": 122358, "species_taxid": 122358, "relation_to_type": "type", "validated": true, "ani": 78.8155, "matched_fragments": 1362, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora saelicesensis", "strain": "strain=DSM 44871", "accession": "GCA_900091575.1", "taxid": 285676, "species_taxid": 285676, "relation_to_type": "type", "validated": true, "ani": 78.7946, "matched_fragments": 1094, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytohabitans suffuscus", "strain": "strain=NBRC 105367", "accession": "GCA_011764565.1", "taxid": 624315, "species_taxid": 624315, "relation_to_type": "type", "validated": true, "ani": 78.6524, "matched_fragments": 1315, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytohabitans rumicis", "strain": "strain=NBRC 108638", "accession": "GCA_011764445.1", "taxid": 1076125, "species_taxid": 1076125, 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78.5089, "matched_fragments": 1223, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Couchioplanes caeruleus subsp. caeruleus", "strain": "strain=DSM 43634", "accession": "GCA_001884705.1", "taxid": 56427, "species_taxid": 56438, "relation_to_type": "type", "validated": true, "ani": 78.484, "matched_fragments": 1007, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Couchioplanes caeruleus", "strain": "strain=DSM 43634", "accession": "GCA_003751945.1", "taxid": 56438, "species_taxid": 56438, "relation_to_type": "type", "validated": true, "ani": 78.4498, "matched_fragments": 1078, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytohabitans houttuyneae", "strain": "strain=NBRC 108639", "accession": "GCA_011764425.1", "taxid": 1076126, "species_taxid": 1076126, "relation_to_type": "type", "validated": true, "ani": 78.3791, "matched_fragments": 1332, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asanoa ishikariensis", "strain": "strain=NBRC 14551", "accession": "GCA_016862535.1", "taxid": 137265, "species_taxid": 137265, "relation_to_type": "type", "validated": true, "ani": 78.3539, "matched_fragments": 1163, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Asanoa ishikariensis", "strain": "strain=DSM 44718", "accession": "GCA_900107455.1", "taxid": 137265, "species_taxid": 137265, "relation_to_type": "type", "validated": true, "ani": 78.3249, "matched_fragments": 1160, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phytohabitans flavus", "strain": "strain=NBRC 107702", "accession": "GCA_011764545.1", "taxid": 1076124, "species_taxid": 1076124, "relation_to_type": "type", "validated": true, "ani": 78.3189, "matched_fragments": 1237, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium roseum", "strain": "strain=NRRL B-16295", "accession": "GCA_025264685.1", "taxid": 47989, "species_taxid": 47989, "relation_to_type": "type", "validated": true, "ani": 77.558, "matched_fragments": 1027, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Dactylosporangium fulvum", "strain": "strain=NRRL B-16292", "accession": "GCA_025137375.1", "taxid": 53359, "species_taxid": 53359, "relation_to_type": "type", "validated": true, "ani": 77.4977, "matched_fragments": 1166, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgisporangium aliadipatigenens", "strain": "strain=NBRC 105644", "accession": "GCA_016863615.1", "taxid": 741659, "species_taxid": 741659, "relation_to_type": "type", "validated": true, "ani": 77.4475, "matched_fragments": 1185, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { 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"strain": "strain=YIM 121974", "accession": "GCA_003933745.1", "taxid": 2493553, "species_taxid": 2493553, "relation_to_type": "type", "validated": true, "ani": 76.284, "matched_fragments": 615, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces albidus", "strain": "strain=NEAU-7082", "accession": "GCA_009451885.1", "taxid": 2656774, "species_taxid": 2656774, "relation_to_type": "type", "validated": true, "ani": 76.2771, "matched_fragments": 610, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces dulcitolivorans", "strain": "strain=SJ-25", "accession": "GCA_003265355.1", "taxid": 2200759, "species_taxid": 2200759, "relation_to_type": "type", "validated": true, "ani": 76.227, "matched_fragments": 519, "total_fragments": 3081, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Glycomyces sambucus", "strain": "strain=CGMCC 4.3147", "accession": 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