{ "type": "genome", "identifier": "GCF_030814015.1", "organism": "Amorphus orientalis", "title": "Amorphus orientalis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030814015.1", "bioproject": "PRJNA224116", "biosample": "SAMN18243392", "wgs_master": "JAUSUL000000000.1", "refseq_category": "reference genome", "taxid": "649198", "species_taxid": "649198", "organism_name": "Amorphus orientalis", "infraspecific_name": "strain=DSM 21202", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/08/18", "asm_name": "ASM3081401v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_030814015.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/814/015/GCF_030814015.1_ASM3081401v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4714805", "genome_size_ungapped": "4714805", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "13", "contig_count": "13", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030814015.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "4327", "protein_coding_gene_count": "4258", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-08-18", "dateModified": "2023-08-18", "datePublished": "2023-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Amorphus orientalis" ], "sample_taxid": [ "649198" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Yunnan, Fenggang salt mine" ], "sample_host_location_id": [], "data_size": "1.292 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4714805", "Number of Sequences": "13", "Longest Sequences (bp)": "1718635", "N50 (bp)": "1458617", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.5", "Number of CDSs": "4306", "Average Protein Length": "323.7", "Coding Ratio (%)": "88.7", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Amorphus coralli", "strain": "strain=DSM 19760", "accession": "GCA_000374525.1", "taxid": 340680, "species_taxid": 340680, "relation_to_type": "type", "validated": true, "ani": 81.1509, "matched_fragments": 848, "total_fragments": 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"organism_name": "Oharaeibacter diazotrophicus", "strain": "strain=DSM 102969", "accession": "GCA_004362745.1", "taxid": 1920512, "species_taxid": 1920512, "relation_to_type": "type", "validated": true, "ani": 77.7156, "matched_fragments": 434, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blastochloris sulfoviridis", "strain": "strain=DSM 729", "accession": "GCA_008630065.1", "taxid": 50712, "species_taxid": 50712, "relation_to_type": "type", "validated": true, "ani": 77.7004, "matched_fragments": 310, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shinella pollutisoli", "strain": "strain=KCTC 52677", "accession": "GCA_024609765.1", "taxid": 2250594, "species_taxid": 2250594, "relation_to_type": "type", "validated": true, "ani": 77.6988, "matched_fragments": 341, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acuticoccus kandeliae", "strain": "strain=J103", "accession": "GCA_003073115.1", "taxid": 2073160, "species_taxid": 2073160, "relation_to_type": "type", "validated": true, "ani": 77.5983, "matched_fragments": 436, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acuticoccus mangrovi", "strain": "strain=B2012", "accession": "GCA_016411865.1", "taxid": 2796142, "species_taxid": 2796142, "relation_to_type": "type", "validated": true, "ani": 77.5848, "matched_fragments": 414, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelatococcus caeni", "strain": "strain=DSM 103737", "accession": "GCA_014196925.1", "taxid": 1348468, "species_taxid": 1348468, "relation_to_type": "type", "validated": true, "ani": 77.5799, "matched_fragments": 352, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phreatobacter cathodiphilus", "strain": "strain=S-12", "accession": "GCA_003008515.1", "taxid": 1868589, "species_taxid": 1868589, "relation_to_type": "type", "validated": true, "ani": 77.5377, "matched_fragments": 313, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobrevis pamukkalensis", "strain": "strain=PK2", "accession": "GCA_001720135.1", "taxid": 1439726, "species_taxid": 1439726, "relation_to_type": "type", "validated": true, "ani": 77.5157, "matched_fragments": 356, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acuticoccus sediminis", "strain": "strain=PTG4-2", "accession": "GCA_003258595.1", "taxid": 2184697, "species_taxid": 2184697, "relation_to_type": "type", "validated": true, "ani": 77.4032, "matched_fragments": 439, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oricola indica", "strain": "strain=JL-62", "accession": "GCA_019966595.1", "taxid": 2872591, "species_taxid": 2872591, "relation_to_type": "type", "validated": true, "ani": 77.2645, "matched_fragments": 236, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tardum", "strain": "strain=DSM 19566", "accession": "GCA_023546765.1", "taxid": 374432, "species_taxid": 374432, "relation_to_type": "type", "validated": true, "ani": 77.2331, "matched_fragments": 297, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter dichloromethanicus", "strain": "strain=VKM B-2484", "accession": "GCA_018390645.1", "taxid": 518825, "species_taxid": 518825, "relation_to_type": "type", "validated": true, "ani": 77.2204, "matched_fragments": 351, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium oryzihabitans", "strain": "strain=TER-1", "accession": "GCA_004004555.2", "taxid": 2499852, "species_taxid": 2499852, "relation_to_type": "type", "validated": true, "ani": 77.2155, "matched_fragments": 374, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter rudongensis", "strain": "strain=CGMCC 1.1761", "accession": "GCA_900100155.1", "taxid": 177413, "species_taxid": 177413, "relation_to_type": "type", "validated": true, "ani": 77.1889, "matched_fragments": 320, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium agreste", "strain": "strain=CNPSo 4010", "accession": "GCA_016031625.1", "taxid": 2751811, "species_taxid": 2751811, "relation_to_type": "type", "validated": true, "ani": 77.1852, "matched_fragments": 304, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tardum", "strain": "strain=NBRC 103632", "accession": "GCA_022179585.1", "taxid": 374432, "species_taxid": 374432, "relation_to_type": "type", "validated": true, "ani": 77.1662, "matched_fragments": 289, 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"below_threshold" }, { "organism_name": "Microvirga flocculans", "strain": "strain=ATCC BAA-817", "accession": "GCA_000518665.1", "taxid": 217168, "species_taxid": 217168, "relation_to_type": "type", "validated": true, "ani": 77.0785, "matched_fragments": 227, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium pachyrhizi", "strain": "strain=PAC 48", "accession": "GCA_001189245.1", "taxid": 280333, "species_taxid": 280333, "relation_to_type": "type", "validated": true, "ani": 77.0095, "matched_fragments": 316, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium uaiense", "strain": "strain=UFLA03-164", "accession": "GCA_010811875.1", "taxid": 2594946, "species_taxid": 2594946, "relation_to_type": "type", "validated": true, "ani": 76.9874, "matched_fragments": 294, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium isbiliense", "strain": "strain=DSM 17168", "accession": "GCA_022179325.1", "taxid": 315478, "species_taxid": 315478, "relation_to_type": "type", "validated": true, "ani": 76.9623, "matched_fragments": 348, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xanthobacter oligotrophicus", "strain": "strain=29k", "accession": "GCA_008364685.1", "taxid": 2607286, "species_taxid": 2607286, "relation_to_type": "type", "validated": true, "ani": 76.9121, "matched_fragments": 284, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium hispanicum", "strain": "strain=DSM 16372", "accession": "GCA_022179285.1", "taxid": 270350, "species_taxid": 270350, "relation_to_type": "type", "validated": true, "ani": 76.9043, "matched_fragments": 298, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga alba", "strain": "strain=BT350", 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