{
    "type": "genome",
    "identifier": "GCF_030814715.1",
    "organism": "Kaistia dalseonensis",
    "title": "Kaistia dalseonensis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "DOE Joint Genome Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_030814715.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN35367916",
        "wgs_master": "JAUSVO000000000.1",
        "refseq_category": "na",
        "taxid": "410840",
        "species_taxid": "410840",
        "organism_name": "Kaistia dalseonensis",
        "infraspecific_name": "strain=B6-8",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2023/08/18",
        "asm_name": "ASM3081471v1",
        "asm_submitter": "DOE Joint Genome Institute",
        "gbrs_paired_asm": "GCA_030814715.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/814/715/GCF_030814715.1_ASM3081471v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5184115",
        "genome_size_ungapped": "5184115",
        "gc_percent": "65.000000",
        "replicon_count": "0",
        "scaffold_count": "11",
        "contig_count": "11",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_030814715.1-RS_2024_08_20",
        "annotation_date": "2024-08-20",
        "total_gene_count": "4911",
        "protein_coding_gene_count": "4813",
        "non_coding_gene_count": "54",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2023-08-18",
    "dateModified": "2023-08-18",
    "datePublished": "2023-08-18",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Kaistia dalseonensis"
        ],
        "sample_taxid": [
            "410840"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea:Korea, Dalseo Stream"
        ],
        "sample_host_location_id": [],
        "data_size": "1.419 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5184115",
        "Number of Sequences": "11",
        "Longest Sequences (bp)": "1335189",
        "N50 (bp)": "705689",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "64.9",
        "Number of CDSs": "4894",
        "Average Protein Length": "314.7",
        "Coding Ratio (%)": "89.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Kaistia hirudinis",
                "strain": "strain=DSM 25966",
                "accession": "GCA_014196455.1",
                "taxid": 1293440,
                "species_taxid": 1293440,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.0669,
                "matched_fragments": 990,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kaistia adipata",
                "strain": "strain=DSM 17808",
                "accession": "GCA_000423225.1",
                "taxid": 166954,
                "species_taxid": 166954,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.508,
                "matched_fragments": 858,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kaistia granuli",
                "strain": "strain=Ko04",
                "accession": "GCA_000380505.1",
                "taxid": 363259,
                "species_taxid": 363259,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4199,
                "matched_fragments": 830,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kaistia soli",
                "strain": "strain=DSM 19436",
                "accession": "GCA_900129325.1",
                "taxid": 446684,
                "species_taxid": 446684,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8614,
                "matched_fragments": 868,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobrevis albus",
                "strain": "strain=L22",
                "accession": "GCA_015904235.1",
                "taxid": 2793297,
                "species_taxid": 2793297,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3515,
                "matched_fragments": 429,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Azorhizobium caulinodans",
                "strain": "strain=ORS 571",
                "accession": "GCA_000010525.1",
                "taxid": 7,
                "species_taxid": 7,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7391,
                "matched_fragments": 307,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Bauldia litoralis",
                "strain": "strain=ATCC 35022",
                "accession": "GCA_900104485.1",
                "taxid": 665467,
                "species_taxid": 665467,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7343,
                "matched_fragments": 405,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Methylobrevis pamukkalensis",
                "strain": "strain=PK2",
                "accession": "GCA_001720135.1",
                "taxid": 1439726,
                "species_taxid": 1439726,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7308,
                "matched_fragments": 373,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ancylobacter sonchi",
                "strain": "strain=VKM B-3145",
                "accession": "GCA_018390695.1",
                "taxid": 1937790,
                "species_taxid": 1937790,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7019,
                "matched_fragments": 447,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Starkeya novella",
                "strain": "strain=DSM 506",
                "accession": "GCA_000092925.1",
                "taxid": 921,
                "species_taxid": 921,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6776,
                "matched_fragments": 429,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella oryzae",
                "strain": "strain=Z-25",
                "accession": "GCA_023038235.1",
                "taxid": 2871820,
                "species_taxid": 2871820,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6533,
                "matched_fragments": 343,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mesorhizobium onobrychidis",
                "strain": "strain=OM4",
                "accession": "GCA_024707545.1",
                "taxid": 2775404,
                "species_taxid": 2775404,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5658,
                "matched_fragments": 367,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Shinella zoogloeoides",
                "strain": "strain=ATCC 19623",
                "accession": "GCA_020883495.1",
                "taxid": 352475,
                "species_taxid": 352475,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5324,
                "matched_fragments": 386,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudaminobacter soli",
                "strain": "strain=HC19",
                "accession": "GCA_014595955.1",
                "taxid": 2831468,
                "species_taxid": 2831468,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.3531,
                "matched_fragments": 293,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudaminobacter soli",
                "strain": "strain=19-2017",
                "accession": "GCA_018310375.1",
                "taxid": 2831468,
                "species_taxid": 2831468,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.32,
                "matched_fragments": 295,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium tubonense",
                "strain": "strain=CCBAU 85046",
                "accession": "GCA_003240585.1",
                "taxid": 484088,
                "species_taxid": 484088,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.1099,
                "matched_fragments": 264,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Enterovirga rhinocerotis",
                "strain": "strain=DSM 25903",
                "accession": "GCA_004363955.1",
                "taxid": 1339210,
                "species_taxid": 1339210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0556,
                "matched_fragments": 293,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Afifella pfennigii",
                "strain": "strain=DSM 17143",
                "accession": "GCA_000688515.1",
                "taxid": 209897,
                "species_taxid": 209897,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9841,
                "matched_fragments": 277,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhodoplanes roseus",
                "strain": "strain=DSM 5909",
                "accession": "GCA_003258865.1",
                "taxid": 29409,
                "species_taxid": 29409,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9593,
                "matched_fragments": 321,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Phreatobacter stygius",
                "strain": "strain=KCTC 52518",
                "accession": "GCA_005144885.1",
                "taxid": 1940610,
                "species_taxid": 1940610,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9227,
                "matched_fragments": 375,
                "total_fragments": 1723,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_014196455.1",
                "gtdb_species": "s__Kaistia hirudinis",
                "ani": 82.0705,
                "matched_fragments": 990,
                "total_fragments": 1723,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Kaistiaceae;g__Kaistia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.80",
                "min_intra_species_ani": "96.80",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_016629525.1",
                "gtdb_species": "s__Kaistia sp016629525",
                "ani": 81.7145,
                "matched_fragments": 878,
                "total_fragments": 1723,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Kaistiaceae;g__Kaistia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017305815.1",
                "gtdb_species": "s__Kaistia sp017305815",
                "ani": 81.7097,
                "matched_fragments": 628,
                "total_fragments": 1723,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Kaistiaceae;g__Kaistia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017307955.1",
                "gtdb_species": "s__Kaistia sp017307955",
                "ani": 81.5294,
                "matched_fragments": 921,
                "total_fragments": 1723,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Kaistiaceae;g__Kaistia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000423225.1",
                "gtdb_species": "s__Kaistia adipata",
                "ani": 81.5125,
                "matched_fragments": 857,
                "total_fragments": 1723,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Kaistiaceae;g__Kaistia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000380505.1",
                "gtdb_species": "s__Kaistia granuli",
                "ani": 81.4097,
                "matched_fragments": 831,
                "total_fragments": 1723,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Kaistiaceae;g__Kaistia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_900129325.1",
                "gtdb_species": "s__Kaistia soli",
                "ani": 80.8523,
                "matched_fragments": 866,
                "total_fragments": 1723,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Kaistiaceae;g__Kaistia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000092925.1",
                "gtdb_species": "s__Starkeya novella",
                "ani": 77.6456,
                "matched_fragments": 436,
                "total_fragments": 1723,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Xanthobacteraceae;g__Starkeya",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017304475.1",
                "gtdb_species": "s__Phreatobacter sp017304475",
                "ani": 77.0604,
                "matched_fragments": 425,
                "total_fragments": 1723,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Phreatobacteraceae;g__Phreatobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_003164915.1",
                "gtdb_species": "s__Roseiarcus sp003164915",
                "ani": 76.369,
                "matched_fragments": 246,
                "total_fragments": 1723,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Roseiarcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.60",
                "min_intra_species_ani": "99.60",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.181,
        "cell_length": 0.044,
        "doubling_h": null,
        "growth_tmp": 28.0,
        "optimum_tmp": 29.8,
        "optimum_ph": 6.95,
        "genome_size": 4949653.0,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.833,
        "coccus_cell_shape": 0.166,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Kaistia",
        "dalseonensis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}