{ "type": "genome", "identifier": "GCF_030814755.1", "organism": "Methylobacterium aerolatum", "title": "Methylobacterium aerolatum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030814755.1", "bioproject": "PRJNA224116", "biosample": "SAMN35367932", "wgs_master": "JAUSVP000000000.1", "refseq_category": "na", "taxid": "418708", "species_taxid": "418708", "organism_name": "Methylobacterium aerolatum", "infraspecific_name": "strain=DSM 19013", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/08/18", "asm_name": "ASM3081475v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_030814755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/814/755/GCF_030814755.1_ASM3081475v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4898706", "genome_size_ungapped": "4898706", "gc_percent": "70.000000", "replicon_count": "0", "scaffold_count": "40", "contig_count": "40", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030814755.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "4545", "protein_coding_gene_count": "4435", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-08-18", "dateModified": "2023-08-18", "datePublished": "2023-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Methylobacterium aerolatum" ], "sample_taxid": [ "418708" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea:Suwon city" ], "sample_host_location_id": [], "data_size": "1.329 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4898706", "Number of Sequences": "40", "Longest Sequences (bp)": "648062", "N50 (bp)": "302629", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.8", "Number of CDSs": "4580", "Average Protein Length": "307.5", "Coding Ratio (%)": "86.3", "Number of rRNAs": "1", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Methylobacterium aerolatum", "strain": "strain=DSM 19013", "accession": "GCA_022179085.1", "taxid": 418708, "species_taxid": 418708, "relation_to_type": "type", "validated": true, "ani": 99.9932, "matched_fragments": 1570, "total_fragments": 1613, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Methylobacterium radiotolerans", "strain": "strain=NBRC 15690", "accession": "GCA_007991055.1", "taxid": 31998, "species_taxid": 31998, "relation_to_type": "type", "validated": true, "ani": 83.1791, "matched_fragments": 1083, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium radiotolerans", "strain": "strain=JCM 2831", "accession": "GCA_000019725.1", "taxid": 31998, "species_taxid": 31998, "relation_to_type": "type", "validated": true, "ani": 83.1466, "matched_fragments": 1127, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium phyllosphaerae", "strain": "strain=CBMB27", "accession": "GCA_900113465.1", "taxid": 418223, "species_taxid": 418223, "relation_to_type": "suspected-type", "validated": true, "ani": 82.751, "matched_fragments": 1043, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium tardum", "strain": "strain=DSM 19566", "accession": "GCA_023546765.1", "taxid": 374432, "species_taxid": 374432, "relation_to_type": "type", "validated": true, "ani": 82.5952, "matched_fragments": 1061, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium pseudosasicola", "strain": "strain=BL36", "accession": "GCA_900114535.1", "taxid": 582667, "species_taxid": 582667, "relation_to_type": "type", "validated": true, "ani": 82.5542, "matched_fragments": 1059, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium mesophilicum", "strain": "strain=NBRC 15688", "accession": "GCA_022179445.1", "taxid": 39956, "species_taxid": 39956, "relation_to_type": "type", "validated": true, "ani": 82.4767, "matched_fragments": 1033, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium phyllostachyos", "strain": "strain=BL47", "accession": "GCA_900103445.1", "taxid": 582672, "species_taxid": 582672, "relation_to_type": "type", "validated": true, "ani": 82.4254, "matched_fragments": 1038, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium dankookense", "strain": "strain=DSM 22415", "accession": "GCA_022179165.1", "taxid": 560405, "species_taxid": 560405, "relation_to_type": "type", "validated": true, "ani": 82.371, "matched_fragments": 932, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium dankookense", "strain": "strain=SW08-7", "accession": "GCA_902141855.1", "taxid": 560405, "species_taxid": 560405, "relation_to_type": "type", "validated": true, "ani": 82.3616, "matched_fragments": 980, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium longum", "strain": "strain=DSM 23933", "accession": "GCA_022179385.1", "taxid": 767694, "species_taxid": 767694, "relation_to_type": "type", "validated": true, "ani": 82.2273, "matched_fragments": 1033, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium symbioticum", "strain": "strain=SB0023/3", "accession": "GCA_902141845.1", "taxid": 2584084, "species_taxid": 2584084, "relation_to_type": "type", "validated": true, "ani": 81.9525, "matched_fragments": 932, "total_fragments": 1613, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_003096615.1", "gtdb_species": "s__Methylobacterium organophilum", "ani": 83.068, "matched_fragments": 1086, "total_fragments": 1613, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.99", "min_intra_species_ani": "98.85", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 18, "status": "-" }, { "accession": "GCF_900112625.1", "gtdb_species": "s__Methylobacterium sp900112625", "ani": 82.963, "matched_fragments": 1100, "total_fragments": 1613, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Beijerinckiaceae;g__Methylobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.34", "min_intra_species_ani": "98.23", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCF_009806555.1", "gtdb_species": "s__Methylobacterium sp009806555", "ani": 82.8292, "matched_fragments": 1064, "total_fragments": 1613, "gtdb_taxonomy": 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