{ "type": "genome", "identifier": "GCF_030814775.1", "organism": "Brevundimonas nasdae", "title": "Brevundimonas nasdae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030814775.1", "bioproject": "PRJNA224116", "biosample": "SAMN35439867", "wgs_master": "JAUSVQ000000000.1", "refseq_category": "na", "taxid": "172043", "species_taxid": "172043", "organism_name": "Brevundimonas nasdae", "infraspecific_name": "strain=DSM 14572", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/08/18", "asm_name": "ASM3081477v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_030814775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/814/775/GCF_030814775.1_ASM3081477v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3746152", "genome_size_ungapped": "3746152", "gc_percent": "65.500000", "replicon_count": "0", "scaffold_count": "28", "contig_count": "28", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030814775.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "3642", "protein_coding_gene_count": "3546", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-08-18", "dateModified": "2023-08-18", "datePublished": "2023-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Brevundimonas nasdae" ], "sample_taxid": [ "172043" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.030 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3746152", "Number of Sequences": "28", "Longest Sequences (bp)": "675200", "N50 (bp)": "260309", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.6", "Number of CDSs": "3603", "Average Protein Length": "313.5", "Coding Ratio (%)": "90.4", "Number of rRNAs": "2", "Number of tRNAs": "54", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevundimonas nasdae", "strain": "strain=JCM 11415", "accession": "GCA_016654005.1", "taxid": 172043, "species_taxid": 172043, "relation_to_type": "type", "validated": true, "ani": 99.9996, "matched_fragments": 1235, "total_fragments": 1237, 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"below_threshold" }, { "organism_name": "Brevundimonas aurantiaca", "strain": "strain=DSM 4731", "accession": "GCA_014199955.1", "taxid": 74316, "species_taxid": 74316, "relation_to_type": "type", "validated": true, "ani": 84.45, "matched_fragments": 729, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas albigilva", "strain": "strain=KEME 9005-016", "accession": "GCA_023503965.1", "taxid": 1312364, "species_taxid": 1312364, "relation_to_type": "type", "validated": true, "ani": 84.3399, "matched_fragments": 736, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas guildfordensis", "strain": "strain=Sa3CVA3", "accession": "GCA_014836405.1", "taxid": 2762241, "species_taxid": 2762241, "relation_to_type": "type", "validated": true, "ani": 82.5294, "matched_fragments": 616, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas naejangsanensis", "strain": "strain=DSM 23858", "accession": "GCA_000421705.1", "taxid": 588932, "species_taxid": 588932, "relation_to_type": "type", "validated": true, "ani": 82.4843, "matched_fragments": 653, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas vitisensis", "strain": "strain=GR-TSA-9", "accession": "GCA_016656965.1", "taxid": 2800818, "species_taxid": 2800818, "relation_to_type": "type", "validated": true, "ani": 80.479, "matched_fragments": 517, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas pishanensis", "strain": "strain=CHPC 1.3453", "accession": "GCA_022750635.1", "taxid": 2896315, "species_taxid": 2896315, "relation_to_type": "type", "validated": true, "ani": 79.4359, "matched_fragments": 416, "total_fragments": 1237, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caulobacter rhizosphaerae", "strain": 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