{ "type": "genome", "identifier": "GCF_030814815.1", "organism": "Ancylobacter amanitiformis", "title": "Ancylobacter amanitiformis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "DOE Joint Genome Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030814815.1", "bioproject": "PRJNA224116", "biosample": "SAMN35367920", "wgs_master": "JAUSVR000000000.1", "refseq_category": "reference genome", "taxid": "217069", "species_taxid": "217069", "organism_name": "Ancylobacter amanitiformis", "infraspecific_name": "strain=DSM 15561", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/08/18", "asm_name": "ASM3081481v1", "asm_submitter": "DOE Joint Genome Institute", "gbrs_paired_asm": "GCA_030814815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/814/815/GCF_030814815.1_ASM3081481v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4839674", "genome_size_ungapped": "4839674", "gc_percent": "67.500000", "replicon_count": "0", "scaffold_count": "44", "contig_count": "44", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030814815.1-RS_2024_08_20", "annotation_date": "2024-08-20", "total_gene_count": "4452", "protein_coding_gene_count": "4335", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-08-18", "dateModified": "2023-08-18", "datePublished": "2023-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Ancylobacter amanitiformis" ], "sample_taxid": [ "217069" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": 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"total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Starkeya novella", "strain": "strain=DSM 506", "accession": "GCA_000092925.1", "taxid": 921, "species_taxid": 921, "relation_to_type": "type", "validated": true, "ani": 84.3499, "matched_fragments": 985, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter dichloromethanicus", "strain": "strain=VKM B-2484", "accession": "GCA_018390645.1", "taxid": 518825, "species_taxid": 518825, "relation_to_type": "type", "validated": true, "ani": 84.1328, "matched_fragments": 975, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter rudongensis", "strain": "strain=CGMCC 1.1761", "accession": "GCA_900100155.1", "taxid": 177413, "species_taxid": 177413, "relation_to_type": "type", "validated": true, "ani": 84.0191, "matched_fragments": 960, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter aquaticus", "strain": "strain=DSM 101", "accession": "GCA_004339465.1", "taxid": 100, "species_taxid": 100, "relation_to_type": "type", "validated": true, "ani": 83.4471, "matched_fragments": 944, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter defluvii", "strain": "strain=VKM B-2789", "accession": "GCA_018390605.1", "taxid": 1282440, "species_taxid": 1282440, "relation_to_type": "type", "validated": true, "ani": 83.2901, "matched_fragments": 1008, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ancylobacter sonchi", "strain": "strain=VKM B-3145", "accession": "GCA_018390695.1", "taxid": 1937790, "species_taxid": 1937790, "relation_to_type": "type", "validated": true, "ani": 83.2439, "matched_fragments": 1020, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium frigidaeris", "strain": "strain=JCM 32048", "accession": "GCA_022179185.1", "taxid": 2038277, "species_taxid": 2038277, "relation_to_type": "type", "validated": true, "ani": 77.3392, "matched_fragments": 456, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 77.3088, "matched_fragments": 484, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium nonmethylotrophicum", "strain": "strain=6HR-1", "accession": "GCA_004745635.1", "taxid": 1141884, "species_taxid": 1141884, "relation_to_type": "type", "validated": true, "ani": 77.2299, "matched_fragments": 472, "total_fragments": 1590, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, 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