{ "type": "genome", "identifier": "GCF_030848945.1", "organism": "Marimonas arenosa", "title": "Marimonas arenosa", "description": "na", "data type": "Genome sequencing and assembly", "organization": "G.B. Elyakov Pacific Institute of Bioorganic Chemistry", "publication": [ {} ], "properties": { "assembly_accession": "GCF_030848945.1", "bioproject": "PRJNA224116", "biosample": "SAMN29883236", "wgs_master": "JANHAX000000000.1", "refseq_category": "reference genome", "taxid": "1795305", "species_taxid": "1795305", "organism_name": "Marimonas arenosa", "infraspecific_name": "strain=KCTC 52189", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2023/08/22", "asm_name": "ASM3084894v1", "asm_submitter": "G.B. Elyakov Pacific Institute of Bioorganic Chemistry", "gbrs_paired_asm": "GCA_030848945.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/030/848/945/GCF_030848945.1_ASM3084894v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4380839", "genome_size_ungapped": "4380839", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "38", "contig_count": "38", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_030848945.1-RS_2024_09_28", "annotation_date": "2024-09-28", "total_gene_count": "4284", "protein_coding_gene_count": "4190", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2023-08-22", "dateModified": "2023-08-22", "datePublished": "2023-08-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Marimonas arenosa" ], "sample_taxid": [ "1795305" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Eulwangri beach" ], "sample_host_location_id": [], "data_size": "1.220 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4380839", "Number of Sequences": "38", "Longest Sequences (bp)": "1285102", "N50 (bp)": "656426", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.3", "Number of CDSs": "4227", "Average Protein Length": "306.2", "Coding Ratio (%)": "88.6", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { 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"strain": "strain=GS-10", "accession": "GCA_009857745.1", "taxid": 2692236, "species_taxid": 2692236, "relation_to_type": "type", "validated": true, "ani": 78.7794, "matched_fragments": 595, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thalassobius aquimarinus", "strain": "strain=KMM 8518", "accession": "GCA_018219815.1", "taxid": 2785917, "species_taxid": 2785917, "relation_to_type": "type", "validated": true, "ani": 78.6945, "matched_fragments": 537, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lutimaribacter saemankumensis", "strain": "strain=DSM 28010", "accession": "GCA_900100005.1", "taxid": 490829, "species_taxid": 490829, "relation_to_type": "type", "validated": true, "ani": 78.6134, "matched_fragments": 494, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria marisrubri", "strain": "strain=ZGT118", "accession": "GCA_001507595.1", "taxid": 1685379, "species_taxid": 1685379, "relation_to_type": "type", "validated": true, "ani": 78.5252, "matched_fragments": 494, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=B108", "accession": "GCA_001441635.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 78.434, "matched_fragments": 520, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_008728195.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 78.4241, "matched_fragments": 525, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius indicus", "strain": "strain=DSM 26383", "accession": "GCA_900112725.1", "taxid": 540747, "species_taxid": 540747, "relation_to_type": "type", "validated": true, "ani": 78.3947, "matched_fragments": 523, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ruegeria sediminis", "strain": "strain=CAU 1488", "accession": "GCA_005938215.1", "taxid": 2583820, "species_taxid": 2583820, "relation_to_type": "type", "validated": true, "ani": 78.3773, "matched_fragments": 485, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger bermudensis", "strain": "strain=HTCC2601", "accession": "GCA_000153725.1", "taxid": 344736, "species_taxid": 344736, "relation_to_type": "type", "validated": true, "ani": 78.3357, "matched_fragments": 484, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseovarius confluentis", "strain": "strain=SAG6", "accession": "GCA_002917925.1", "taxid": 1852027, "species_taxid": 1852027, "relation_to_type": "type", "validated": true, "ani": 78.1213, "matched_fragments": 437, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger thiooxidans", "strain": "strain=DSM 10146", "accession": "GCA_900102075.1", "taxid": 282683, "species_taxid": 282683, "relation_to_type": "type", "validated": true, "ani": 78.103, "matched_fragments": 480, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum robiginosum", "strain": "strain=DSM 12329", "accession": "GCA_003944755.1", "taxid": 68292, "species_taxid": 68292, "relation_to_type": "type", "validated": true, "ani": 78.074, "matched_fragments": 463, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum tesquicola", "strain": "strain=A-36s", "accession": "GCA_024128855.1", "taxid": 540254, "species_taxid": 540254, "relation_to_type": "type", "validated": true, "ani": 78.0491, "matched_fragments": 378, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum steppense", "strain": "strain=DSM 21153", "accession": "GCA_004339675.1", "taxid": 540251, "species_taxid": 540251, "relation_to_type": "type", "validated": true, "ani": 78.0283, "matched_fragments": 387, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salibaculum halophilum", "strain": "strain=WDS1C4", "accession": "GCA_002094885.1", "taxid": 1914408, "species_taxid": 1914408, "relation_to_type": "type", "validated": true, "ani": 77.9884, "matched_fragments": 333, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudooceanicola endophyticus", "strain": "strain=CBS1P-1", "accession": "GCA_018760365.1", "taxid": 2841273, "species_taxid": 2841273, "relation_to_type": "type", "validated": true, "ani": 77.9789, "matched_fragments": 416, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella alba", "strain": "strain=CGMCC 1.7290", "accession": "GCA_900101505.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8663, "matched_fragments": 487, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mameliella alba", "strain": "strain=DSM 26384", "accession": "GCA_003051025.1", "taxid": 561184, "species_taxid": 561184, "relation_to_type": "suspected-type", "validated": true, "ani": 77.8632, "matched_fragments": 486, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum strictum", "strain": "strain=DSM 11289", "accession": "GCA_009649175.1", "taxid": 58314, "species_taxid": 58314, "relation_to_type": "type", "validated": true, "ani": 77.714, "matched_fragments": 396, "total_fragments": 1451, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger pallidus", "strain": 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"min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_001314705.1", "gtdb_species": "s__Aquicoccus sp001314705", "ani": 79.4182, "matched_fragments": 619, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Aquicoccus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900109035.1", "gtdb_species": "s__Cribrihabitans marinus", "ani": 79.051, "matched_fragments": 522, "total_fragments": 1451, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Cribrihabitans", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.99", "min_intra_species_af": 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